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辐射损伤对冷冻水合单纯疱疹病毒1型衣壳结构的影响。

The effects of radiation damage on the structure of frozen hydrated HSV-1 capsids.

作者信息

Conway J F, Trus B L, Booy F P, Newcomb W W, Brown J C, Steven A C

机构信息

Laboratory of Structural Biology, National Institute of Arthritis, Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland 20892.

出版信息

J Struct Biol. 1993 Nov-Dec;111(3):222-33. doi: 10.1006/jsbi.1993.1052.

Abstract

Radiation damage imposes stringent limits on the information content of electron micrographs of biological specimens. In this study, we have investigated its effects on frozen, hydrated specimens and three-dimensional reconstructions calculated from cryomicrographs using capsids of herpes simplex virus as a model system. Multiple-exposure series of micrographs of both B-capsids (which contain no DNA) and C-capsids (which are fully packaged) were recorded and reconstructions were calculated from the first exposures, corresponding to a cumulative electron dose of 6-7 e-/A2, and from later exposures (25-40 e-/A2). Experimental procedures were standardized to ensure that perceived changes in the micrographs and reconstructions would be attributable to radiation damage alone. The effects of the higher doses in both the micrographs and the reconstructions were expressed as a progressive blurring of the finer details, corresponding to a delocalization of structure in the ice-embedded specimens. The resolutions of the reconstructions were quantified according to a form of the Fourier ring correlation coefficient criterion, according to which the first-exposure reconstructions had resolutions of 30-36 A. The fifth-exposure B-capsid reconstruction had comparable nominal resolution, although it exhibited progressively lower correlations at higher spatial frequencies. Qualitatively similar changes in the series of C-capsid reconstructions were observed although they were more pronounced, presumably because these micrographs had lower contrast and signal-to-noise ratios. We infer that the observed changes in the images and reconstructions and the concomitant loss in contrast in the immediate vicinity of the capsid surface may reflect radiation-induced perturbation of molecular structure and/or the release of peptide fragments. Nevertheless, the observed changes are relatively subtle, at least at the operational resolution of this study; overall, our results support earlier indications (M. F. Schmid et al. J. Struct. Biol. 108, 62-68, 1992) that prospects are quite good for tilt-series reconstructions from cryoelectron micrographs, including six to eight views of the same specimen.

摘要

辐射损伤对生物标本电子显微照片的信息含量施加了严格限制。在本研究中,我们以单纯疱疹病毒衣壳作为模型系统,研究了辐射损伤对冷冻水合标本以及从冷冻显微照片计算得到的三维重建的影响。记录了B型衣壳(不含DNA)和C型衣壳(完全包装)的多曝光系列显微照片,并从首次曝光(对应累积电子剂量为6 - 7 e⁻/Ų)以及后续曝光(25 - 40 e⁻/Ų)计算重建结果。实验程序标准化以确保显微照片和重建中观察到的变化仅归因于辐射损伤。较高剂量在显微照片和重建中的影响表现为精细细节逐渐模糊,这对应于冰包埋标本中结构的离域化。根据傅里叶环相关系数标准的一种形式对重建分辨率进行量化,据此首次曝光重建的分辨率为30 - 36 Å。第五次曝光的B型衣壳重建具有可比的标称分辨率,尽管在较高空间频率下其相关性逐渐降低。在C型衣壳重建系列中观察到定性上类似的变化,尽管更为明显,推测是因为这些显微照片具有较低的对比度和信噪比。我们推断,在衣壳表面附近图像和重建中观察到的变化以及对比度的相应损失可能反映了辐射诱导的分子结构扰动和/或肽片段的释放。然而,至少在本研究的操作分辨率下,观察到的变化相对细微;总体而言,我们的结果支持早期迹象(M. F. Schmid等人,《结构生物学杂志》108,62 - 68,1992),即从冷冻电子显微照片进行倾斜系列重建的前景相当好,包括对同一标本的六到八个视图。

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