Yennawar N H, Yennawar H P, Farber G K
Department of Chemistry, Pennsylvania State University, University Park 16802.
Biochemistry. 1994 Jun 14;33(23):7326-36. doi: 10.1021/bi00189a038.
Crystals of gamma-chymotrypsin grown in aqueous solution were soaked in n-hexane, and the structures of both the soaked and the native crystals were determined to 2.2-A resolution. Seven hexane molecules and 130 water molecules were found in the hexane-soaked crystals. Two of the seven hexane molecules are found near the active site, and the rest are close to hydrophobic regions on or near the surface of the enzyme. In the hexane structure, water molecules that were not observed in the native structure form a clathrate around one of the hexane molecules. Only 97 water molecules were found in the native structure. The temperature factors for atoms in the hexane environment are lower than those in the aqueous environment. There are significant changes between the two structures in the side chains of both polar and neutral residues, particularly in the vicinity of the hexane molecules. These changes have perturbed the hydrogen-bonding patterns. The electron density for the peptide bound in the active site has been dramatically altered in hexane and appears to be tetrahedral at the carbon that is covalently bound to Ser 195. The crystalline enzyme retains its active conformation in the nonpolar medium and can catalyze both hydrolysis and synthesis reactions in hexane.
将在水溶液中生长的γ-糜蛋白酶晶体浸泡在正己烷中,并测定了浸泡后晶体和天然晶体的结构,分辨率达到2.2埃。在正己烷浸泡的晶体中发现了7个正己烷分子和130个水分子。7个正己烷分子中有2个位于活性位点附近,其余的靠近酶表面或其附近的疏水区域。在正己烷结构中,天然结构中未观察到的水分子在其中一个正己烷分子周围形成笼形包合物。在天然结构中仅发现97个水分子。正己烷环境中原子的温度因子低于水环境中的温度因子。极性和中性残基的侧链在两种结构之间有显著变化,特别是在正己烷分子附近。这些变化扰乱了氢键模式。活性位点中结合的肽的电子密度在正己烷中发生了显著改变,并且在与Ser 195共价结合的碳原子处似乎是四面体的。结晶酶在非极性介质中保持其活性构象,并且可以在正己烷中催化水解和合成反应。