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小鼠核糖体DNA 5'非转录区的渐进性定向B-Z转变

Gradual and oriented B-Z transition in 5'-untranscribed region of mouse ribosomal DNA.

作者信息

Albert A C, Roman A M, Bouche G, Leng M, Rahmouni A R

机构信息

Centre de Biophysique Moléculaire, CNRS, Orléans, France.

出版信息

J Biol Chem. 1994 Jul 29;269(30):19238-44.

PMID:8034685
Abstract

The structural transition of an alternating purine-pyrimidine sequence (CG)5(TG)28) from the 5'-untranscribed region of the mouse ribosomal DNA was analyzed by two-dimensional gel electrophoresis and chemical probes. The repeat undergoes a supercoil-dependent gradual and oriented B-Z transition. At a threshold level of negative supercoiling, a limited region of the repeat encompassing the (CG)5 motif converts cooperatively into Z-DNA. As the superhelical stress increases, the Z-structure propagates along the remaining part of the repeat by successive transitions until the full-length sequence is converted. By in situ OsO4 probing experiments, we show also that this (TG)n-containing repeat adopts the Z-structure in Escherichia coli.

摘要

通过二维凝胶电泳和化学探针分析了小鼠核糖体DNA 5'-非转录区交替嘌呤-嘧啶序列(CG)5(TG)28的结构转变。该重复序列经历超螺旋依赖性的渐进且定向的B-Z转变。在负超螺旋达到阈值水平时,包含(CG)5基序的重复序列的有限区域协同转变为Z-DNA。随着超螺旋应力增加,Z结构通过连续转变沿着重复序列的其余部分传播直至全长序列被转变。通过原位OsO4探测实验,我们还表明这种含(TG)n重复序列在大肠杆菌中采用Z结构。

相似文献

1
Gradual and oriented B-Z transition in 5'-untranscribed region of mouse ribosomal DNA.小鼠核糖体DNA 5'非转录区的渐进性定向B-Z转变
J Biol Chem. 1994 Jul 29;269(30):19238-44.
2
The size of the topological domain modulates the B-Z transition of a (TG)n containing repeat.
J Biomol Struct Dyn. 1995 Aug;13(1):47-56. doi: 10.1080/07391102.1995.10508820.
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A study of the B-Z transition of the AC-rich region of the repeat unit of a satellite DNA from Cebus by means of chemical probes.利用化学探针研究来自僧面猴属的卫星DNA重复单元富含AC区域的B-Z转变。
J Biol Chem. 1988 Aug 25;263(24):11826-32.
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Characteristics of Z-DNA helices formed by imperfect (purine-pyrimidine) sequences in plasmids.质粒中由不完全(嘌呤 - 嘧啶)序列形成的Z - DNA螺旋的特征。
J Biol Chem. 1988 May 25;263(15):7378-85.
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Strong sequence-dependent polymorphism in adduct-induced DNA structure: analysis of single N-2-acetylaminofluorene residues bound within the NarI mutation hot spot.加合物诱导的DNA结构中强烈的序列依赖性多态性:对NarI突变热点内结合的单个N-2-乙酰氨基芴残基的分析。
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Chemical probing of the B-Z transition in negatively supercoiled DNA.
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Stochastic distribution of a short region of Z-DNA within a long repeated sequence in negatively supercoiled plasmids.负超螺旋质粒中长重复序列内Z-DNA短区域的随机分布。
J Biol Chem. 1988 Apr 5;263(10):4512-5.
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Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.DNA构象的化学探针:核苷酸分辨率下Z-DNA的检测
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The Z-Z junction: the boundary between two out-of-phase Z-DNA regions.Z-Z连接:两个异相Z-DNA区域之间的边界。
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The non-B-DNA structure of d(CA/TG)n differs from that of Z-DNA.d(CA/TG)n的非B-DNA结构不同于Z-DNA的结构。
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The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control.细菌tRNA启动子的超螺旋敏感性与其对严格控制的反应性相似。
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Hyper-negative template DNA supercoiling during transcription of the tetracycline-resistance gene in topA mutants is largely constrained in vivo.
在topA突变体中,四环素抗性基因转录过程中超负超螺旋模板DNA在体内受到很大限制。
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