Simopoulos T T, Jencks W P
Graduate Department of Biochemistry, Brandeis University, Waltham, Massachusetts 02254-9110.
Biochemistry. 1994 Aug 30;33(34):10375-80. doi: 10.1021/bi00200a018.
The second-order rate constant, kcat/km, for catalysis of the hydrolysis of 4-nitrophenyl phosphate by alkaline phosphatase decreases with increasing viscosity in the presence of sucrose or arabinose, with a slope of delta[kcat/Km)0/(kcat/Km)]/delta(eta/eta 0) = 1.4 at pH 8.0, 25 degrees C. This is consistent with rate-limiting diffusional encounter of the substrate with active enzyme and indicates that alkaline phosphatase is a "perfect enzyme". However, the reported second-order rate constants of kcat/Km = 6.6 x 10(6) to 4.6 x 10(7) M-1 s-1 are smaller than the diffusional limit; this shows that only approximately 0.1-1% of the diffusional encounters are productive. The first-order rate constant, kcat, for rate-limiting hydrolysis of the phosphoenzyme intermediate at pH = 6 with saturating substrate concentration is independent of viscosity in aqueous sucrose solutions. This shows that sucrose does not destabilize the transition state for phosphoenzyme hydrolysis. However, at pH 8.0 product dissociation is rate limiting and kcat decreases with increasing viscosity in the presence of sucrose, with slopes of delta(k0/kobsd)/delta(eta/eta 0) = 1.2 in 0.04 M Mops buffer, 1.0 in 0.1 M Tris, and 1.2 in 0.67 M Tris buffer. This is consistent with rate-limiting diffusional separation of inorganic phosphate and of Tris phosphate from the enzyme. In contrast, glycerol causes a large decrease in kcat/Km at pH 8.0 and also decreases kcat at pH 6. This shows that glycerol decreases the rate by a solvent effect on the catalytic activity of the enzyme, as well as by increasing the viscosity.
在pH 8.0、25℃条件下,碱性磷酸酶催化4-硝基苯磷酸水解的二级速率常数kcat/km,在蔗糖或阿拉伯糖存在时,会随着粘度增加而降低,其斜率为δ[kcat/Km)0/(kcat/Km)]/δ(η/η0)=1.4。这与底物与活性酶之间限速扩散碰撞一致,表明碱性磷酸酶是一种“完美酶”。然而,报道的kcat/Km二级速率常数为6.6×10(6)至4.6×10(7)M-1 s-1,小于扩散极限;这表明只有约0.1 - 1%的扩散碰撞是有效的。在饱和底物浓度下,pH = 6时磷酸酶中间体限速水解的一级速率常数kcat,在蔗糖水溶液中与粘度无关。这表明蔗糖不会使磷酸酶水解的过渡态不稳定。然而,在pH 8.0时,产物解离是限速步骤,在蔗糖存在下,kcat随粘度增加而降低,在0.04M Mops缓冲液中的斜率为δ(k0/kobsd)/δ(η/η0)=1.2,在0.1M Tris缓冲液中为1.0,在0.67M Tris缓冲液中为1.2。这与无机磷酸和磷酸三酯从酶中限速扩散分离一致。相比之下,甘油在pH 8.0时会使kcat/Km大幅降低,在pH 6时也会降低kcat。这表明甘油不仅通过增加粘度,还通过对酶催化活性的溶剂效应来降低反应速率。