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形式生物系统的层次功能组织:一种动力学方法。III. 非局部性概念导致一种场论,该场论描述了(D - FBS)子系统各组织层次的动力学。

Hierarchical functional organization of formal biological systems: a dynamical approach. III. The concept of non-locality leads to a field theory describing the dynamics at each level of organization of the (D-FBS) sub-system.

作者信息

Chauvet G A

机构信息

Institut de Biologie Théorique, Université d'Angers, France.

出版信息

Philos Trans R Soc Lond B Biol Sci. 1993 Mar 29;339(1290):463-81. doi: 10.1098/rstb.1993.0042.

Abstract

In paper I, the construction of the graph of interactions, called (O-FBS), was deduced from the 'self-association hypothesis'. In paper II, a criterion of evolution during development for the (O-FBS), which represents the topology of the biological system, was deduced from an optimum principle leading to specific dynamics. Experimental verification of the proposed extremum hypothesis is possible because precise knowledge of the dynamics is not necessary; only knowledge of the monotonic variation of the number of sinks is required for given initial conditions. Essentially, the properties of the (O-FBS) are based on the concept of non-symmetry of functional interactions, as shown by the 'orgatropy' function (paper II). In this paper, a field theory is proposed to describe the (D-FBS), i.e. the physiological processes expressed by functional interactions: (i) physiological processes are conceived as the transport of a field variable submitted to the action of a field operator; (ii) because of hierarchy, this field theory is based on the concept of non-locality, and includes a non-local and non-symmetric interaction operator; (iii) the geometry of the structure contributes to the dynamics via the densities of structural units; and (iv) because a physiological process evolves on a particular timescale, it is possible to classify the levels of organization according to distinct timescales, and, therefore, to obtain a 'decoupling' of dynamics at each level. Thus, a property of structurality for a biological system is proposed, which is based on the finiteness of the velocity of the interaction, thus, with distinct values of timescales for the construction of the hierarchy of the system. Three axioms are introduced to define the fields associated with the topology of the system: (i) the existence of the fields; (ii) the decoupling of the dynamics; and (iii) the ability of activation-inhibition. This formulation leads to a self-coherent definition of auto-organization: an FBS is self-organized if it goes from one stable state for the (D-FBS) to another under the influence of certain modifications of its topology, i.e. a modification of the (O-FBS). It is shown that properties deduced with this formalism give the relationship between topology and geometry in an FBS, and particularly, the geometrical re-distribution of units.(ABSTRACT TRUNCATED AT 400 WORDS)

摘要

在论文I中,被称为(O - FBS)的相互作用图的构建是从“自缔合假设”推导出来的。在论文II中,代表生物系统拓扑结构的(O - FBS)在发育过程中的演化准则是从导致特定动力学的最优原理推导出来的。对所提出的极值假设进行实验验证是可能的,因为不需要精确了解动力学;对于给定的初始条件,只需要知道汇数量的单调变化即可。本质上,(O - FBS)的性质基于功能相互作用的非对称性概念,如“组织熵”函数所示(论文II)。在本文中,提出了一种场论来描述(D - FBS),即由功能相互作用所表达的生理过程:(i)生理过程被设想为一个场变量在一个场算子作用下的传输;(ii)由于层次结构,这种场论基于非局域性概念,并包括一个非局域且非对称的相互作用算子;(iii)结构的几何形状通过结构单元的密度对动力学产生影响;(iv)由于生理过程在特定的时间尺度上演变,所以可以根据不同的时间尺度对组织层次进行分类,从而在每个层次上实现动力学的“解耦”。因此,提出了生物系统的一种结构性质,它基于相互作用速度的有限性,从而在构建系统层次结构时有不同的时间尺度值。引入了三条公理来定义与系统拓扑相关的场:(i)场的存在;(ii)动力学的解耦;(iii)激活 - 抑制能力。这种表述导致了自组织的自洽定义:如果一个FBS在其拓扑结构的某些修改(即(O - FBS)的修改)的影响下从(D - FBS)的一个稳定状态转变到另一个稳定状态,那么它就是自组织的。结果表明,用这种形式主义推导出来的性质给出了FBS中拓扑与几何之间的关系,特别是单元的几何重新分布。(摘要截断于400字)

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