Petrich J W, Lambry J C, Balasubramanian S, Lambright D G, Boxer S G, Martin J L
Laboratoire d'Optique Applique, Ecole Polytechnique ENSTA, INSERM U275, Palaiseau, France.
J Mol Biol. 1994 May 6;238(3):437-44. doi: 10.1006/jmbi.1994.1302.
Flash photolysis studies of NO recombination to heme proteins offer a direct probe of protein structural changes on the tens of picoseconds timescale where they can be compared with molecular dynamics simulations. The geminate recombination of NO to site-specific mutants of human myoglobin (Mb) was studied following photodissociation of the MbNO form. Single amino acid changes were introduced at positions Val68, His64, Lys45 and Asp60 because motions of residues at these positions are generally regarded as important for the mechanism of ligand binding. In sharp contrast to the properties of simple porphyrin-NO complexes, the rebinding kinetics are found to be non-exponential for all mutants, even in aqueous solution at 298 K. The Val68 and His64 mutants substantially affect the NO rebinding rates but, surprisingly, so do changes on the protein surface that are further away from the iron. These changes in kinetics occur on a tens of picoseconds timescale, and therefore there is either a fast communication between protein residues over quite long distances or there are subtle differences in protein structure that exert great control over the reaction dynamics. Various models for the rebinding kinetics are evaluated. A model-free approach to data analysis using the maximum entropy method is found to be most useful. This analysis shows that the rate distributions are very different for the mutants, but are generally bimodal.
对一氧化氮(NO)与血红素蛋白重组的闪光光解研究提供了一个直接的探针,用于探测在几十皮秒时间尺度上的蛋白质结构变化,在此时间尺度上可以将这些变化与分子动力学模拟进行比较。在肌红蛋白一氧化氮(MbNO)形式光解离后,研究了NO与人类肌红蛋白(Mb)位点特异性突变体的双分子重组。在缬氨酸68(Val68)、组氨酸64(His64)、赖氨酸45(Lys45)和天冬氨酸60(Asp60)位置引入了单个氨基酸变化,因为这些位置残基的运动通常被认为对配体结合机制很重要。与简单卟啉-NO复合物的性质形成鲜明对比的是,发现所有突变体的再结合动力学都是非指数的,即使在298K的水溶液中也是如此。Val68和His64突变体对NO再结合速率有显著影响,但令人惊讶的是,远离铁的蛋白质表面的变化也有同样的影响。这些动力学变化发生在几十皮秒的时间尺度上, 因此,要么蛋白质残基之间在相当长的距离上存在快速通讯,要么蛋白质结构存在细微差异,对反应动力学有很大的控制作用。评估了再结合动力学的各种模型。发现使用最大熵方法的无模型数据分析方法最有用。该分析表明,突变体的速率分布非常不同,但通常是双峰的。