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一种使用反义寡核苷酸混合物在非洲爪蟾中消融mRNA的更高效、更具特异性的策略。

A more efficient and specific strategy in the ablation of mRNA in Xenopus laevis using mixtures of antisense oligos.

作者信息

Morgan R, Edge M, Colman A

机构信息

School of Biochemistry, University of Birmingham, UK.

出版信息

Nucleic Acids Res. 1993 Sep 25;21(19):4615-20. doi: 10.1093/nar/21.19.4615.

DOI:10.1093/nar/21.19.4615
PMID:8233799
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC311199/
Abstract

Previously, antisense oligodeoxyribonucleotides (oligos) have been used to ablate specific mRNAs from the maternal RNA pool of Xenopus laevis oocytes. However, this strategy is limited by the dose of oligo which can be used and the fact that 100% cleavage of the target RNA is rare. Further, non-specific cleavage of other RNAs can also occur. We demonstrate that the use of several oligos against the histone H4 RNA results in a marked improvement in the efficiency of target degradation, due to synergistic action between oligos and the existence of RNA in at least two different secondary structures. We show, by using a set of overlapping oligos complementary to the entire H4 RNA, that the amount of oligo required for efficient target ablation is greatly lowered and non-specific effects are reduced.

摘要

此前,反义寡脱氧核糖核苷酸(oligos)已被用于从非洲爪蟾卵母细胞的母源RNA池中消除特定的mRNA。然而,该策略受到可使用的oligo剂量以及靶RNA很少能被100%切割这一事实的限制。此外,其他RNA的非特异性切割也可能发生。我们证明,由于oligos之间的协同作用以及RNA至少存在两种不同二级结构,使用几种针对组蛋白H4 RNA的oligos可显著提高靶标降解效率。我们通过使用一组与整个H4 RNA互补的重叠oligos表明,有效消除靶标所需的oligo量大大降低,非特异性效应也减少了。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/75d85f2e6d58/nar00068-0196-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/dee3e099aa2f/nar00068-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/40f910e63fe6/nar00068-0195-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/b07ff5309670/nar00068-0195-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/d90564c7d312/nar00068-0196-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/8614ceeb1b67/nar00068-0196-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/75d85f2e6d58/nar00068-0196-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/dee3e099aa2f/nar00068-0195-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/40f910e63fe6/nar00068-0195-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/b07ff5309670/nar00068-0195-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/d90564c7d312/nar00068-0196-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/8614ceeb1b67/nar00068-0196-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad05/311199/75d85f2e6d58/nar00068-0196-c.jpg

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本文引用的文献

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Functional messenger RNAs are produced by SP6 in vitro transcription of cloned cDNAs.功能性信使核糖核酸通过克隆的互补脱氧核糖核酸的SP6体外转录产生。
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Comparative inhibition of chloramphenicol acetyltransferase gene expression by antisense oligonucleotide analogues having alkyl phosphotriester, methylphosphonate and phosphorothioate linkages.具有烷基磷酸三酯、甲基膦酸酯和硫代磷酸酯键的反义寡核苷酸类似物对氯霉素乙酰转移酶基因表达的比较抑制作用。
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Enzymatic amplification of translation inhibition of rabbit beta-globin mRNA mediated by anti-messenger oligodeoxynucleotides covalently linked to intercalating agents.通过与嵌入剂共价连接的反义寡脱氧核苷酸介导的兔β-珠蛋白mRNA翻译抑制的酶促扩增。
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The use of single-stranded DNA and RNase H to promote quantitative 'hybrid arrest of translation' of mRNA/DNA hybrids in reticulocyte lysate cell-free translations.使用单链DNA和核糖核酸酶H促进网织红细胞裂解物无细胞翻译中mRNA/DNA杂交体的定量“翻译杂交抑制”。
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Selective elimination of mRNAs in vivo: complementary oligodeoxynucleotides promote RNA degradation by an RNase H-like activity.体内mRNA的选择性消除:互补寡脱氧核苷酸通过类似RNase H的活性促进RNA降解。
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