DNA序列差异对芽孢杆菌属中性别隔离的影响。
The effect of DNA sequence divergence on sexual isolation in Bacillus.
作者信息
Roberts M S, Cohan F M
机构信息
Department of Biology, Wesleyan University, Middletown, Connecticut 06459-0170.
出版信息
Genetics. 1993 Jun;134(2):401-8. doi: 10.1093/genetics/134.2.401.
Abstract
We have investigated the relationship between sexual isolation and DNA sequence divergence in the transformation (at locus rpoB) of a naturally competent strain of Bacillus subtilis. Using both genomic DNA and a PCR-amplified segment of gene rpoB as donor, we found that the extent of sexual isolation at locus rpoB was closely predicted, over three orders of magnitude, as a log-linear function of sequence divergence at that locus. Because sexual isolation between a recipient and any potential donor may be determined as a general mathematical function of sequence divergence, transformation is perhaps the only sexual system, in either the prokaryotic or the eukaryotic world, in which sexual isolation can be predicted for a pair of species without having to perform the cross. These observations suggest the possibility of a general approach to the indirect prediction of sexual isolation in bacteria recombining principally by natural transformation.
摘要
我们研究了枯草芽孢杆菌自然感受态菌株在转化过程中（rpoB位点）性隔离与DNA序列差异之间的关系。使用基因组DNA和基因rpoB的PCR扩增片段作为供体，我们发现rpoB位点的性隔离程度在三个数量级上都能作为该位点序列差异的对数线性函数被精确预测。由于受体与任何潜在供体之间的性隔离可以被确定为序列差异的一般数学函数，因此转化可能是原核生物或真核生物世界中唯一一种无需进行杂交就能预测一对物种性隔离的有性系统。这些观察结果表明，对于主要通过自然转化进行重组的细菌，可能存在一种间接预测性隔离的通用方法。
相似文献
1
The effect of DNA sequence divergence on sexual isolation in Bacillus.DNA序列差异对芽孢杆菌属中性别隔离的影响。
Genetics. 1993 Jun;134(2):401-8. doi: 10.1093/genetics/134.2.401.
2
The log-linear relationship between sexual isolation and sequence divergence in Bacillus transformation is robust.在芽孢杆菌转化中，性隔离与序列差异之间的对数线性关系是稳固的。
Genetics. 1995 Jul;140(3):917-32. doi: 10.1093/genetics/140.3.917.
3
Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition.莫哈韦芽孢杆菌新种，可通过有性分离、DNA序列差异和脂肪酸组成差异与枯草芽孢杆菌区分开来。
Int J Syst Bacteriol. 1994 Apr;44(2):256-64. doi: 10.1099/00207713-44-2-256.
4
DNA sequence similarity requirements for interspecific recombination in Bacillus.芽孢杆菌种间重组的DNA序列相似性要求
Genetics. 1999 Dec;153(4):1525-33. doi: 10.1093/genetics/153.4.1525.
5
The effect of mismatch repair and heteroduplex formation on sexual isolation in Bacillus.错配修复和异源双链体形成对芽孢杆菌中性别隔离的影响。
Genetics. 1998 Jan;148(1):13-8. doi: 10.1093/genetics/148.1.13.
6
The size and continuity of DNA segments integrated in Bacillus transformation.整合于芽孢杆菌转化中的DNA片段的大小和连续性。
Genetics. 1995 Dec;141(4):1231-43. doi: 10.1093/genetics/141.4.1231.
7
Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov.与168菌株和W23菌株相关的枯草芽孢杆菌进化枝的关系：枯草芽孢杆菌枯草亚种新亚种和枯草芽孢杆菌斯皮兹森亚种新亚种的提议
Int J Syst Bacteriol. 1999 Jul;49 Pt 3:1211-5. doi: 10.1099/00207713-49-3-1211.
8
Phylogenetic analysis and confirmation of the endospore-forming nature of Pasteuria penetrans based on the spo0A gene.基于spo0A基因的穿透巴氏杆菌芽孢形成特性的系统发育分析与确认
FEMS Microbiol Lett. 2003 Aug 29;225(2):249-56. doi: 10.1016/S0378-1097(03)00528-7.
9
Non-radioactive labeled probe preparation for hbs gene detection.用于乙肝表面抗原（HBs）基因检测的非放射性标记探针制备
Pak J Biol Sci. 2009 Jun 15;12(12):914-8. doi: 10.3923/pjbs.2009.914.918.
10
Subtilosin production by two Bacillus subtilis subspecies and variance of the sbo-alb cluster.两种枯草芽孢杆菌亚种的枯草菌素产生及sbo-alb基因簇的变异
Appl Environ Microbiol. 2004 Apr;70(4):2349-53. doi: 10.1128/AEM.70.4.2349-2353.2004.
引用本文的文献
1
Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes.利用系统发育和全基因组研究基因添加和替代水平基因转移。
Genome Biol Evol. 2024 Sep 3;16(9). doi: 10.1093/gbe/evae180.
2
Genome-wide transformation reveals extensive exchange across closely related Bacillus species.全基因组转化揭示了密切相关的芽孢杆菌属种间广泛的基因交换。
Nucleic Acids Res. 2023 Dec 11;51(22):12352-12366. doi: 10.1093/nar/gkad1074.
3
Sentinel cells programmed to respond to environmental DNA including human sequences.被编程以响应包括人类序列在内的环境 DNA 的哨兵细胞。
Nat Chem Biol. 2024 Feb;20(2):211-220. doi: 10.1038/s41589-023-01431-1. Epub 2023 Sep 28.
4
Escherichia Coli: What Is and Which Are?大肠杆菌：是什么和有哪些？
Mol Biol Evol. 2023 Jan 4;40(1). doi: 10.1093/molbev/msac273.
5
Whole-Genome Transformation of Yeast Promotes Rare Host Mutations with a Single Causative SNP Enhancing Acetic Acid Tolerance.酵母的全基因组转化促进罕见宿主突变，单个致病单核苷酸多态性增强乙酸耐受性。
Mol Cell Biol. 2022 Apr 21;42(4):e0056021. doi: 10.1128/mcb.00560-21. Epub 2022 Mar 21.
6
Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination.芽孢杆菌属中的原生质体融合会频繁、无偏向地发生全基因组范围的同源重组。
Nucleic Acids Res. 2022 Jun 24;50(11):6211-6223. doi: 10.1093/nar/gkac025.
7
Kin discrimination promotes horizontal gene transfer between unrelated strains in Bacillus subtilis.亲缘歧视促进枯草芽孢杆菌中不相关菌株间的水平基因转移。
Nat Commun. 2021 Jun 8;12(1):3457. doi: 10.1038/s41467-021-23685-w.
8
Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress.全基因组转化促进应激下 tRNA 反密码子抑制突变。
mBio. 2021 Mar 23;12(2):e03649-20. doi: 10.1128/mBio.03649-20.
9
CoreSimul: a forward-in-time simulator of genome evolution for prokaryotes modeling homologous recombination.CoreSimul：一种针对原核生物的基于同源重组的基因组进化正向时间模拟器。
BMC Bioinformatics. 2020 Jun 24;21(1):264. doi: 10.1186/s12859-020-03619-x.
10
A genomic view of experimental intraspecies and interspecies transformation of a rifampicin-resistance allele into Neisseria meningitidis.一个 rifampicin 耐药等位基因在脑膜炎奈瑟菌种内和种间实验性转化的基因组视角。
Microb Genom. 2018 Nov;4(11). doi: 10.1099/mgen.0.000222. Epub 2018 Sep 25.
本文引用的文献
1
INTERSPECIFIC TRANSFORMATION IN BACILLUS.芽孢杆菌中的种间转化
J Bacteriol. 1963 Feb;85(2):461-7. doi: 10.1128/jb.85.2.461-467.1963.
2
Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis. II. Unstable association of heterologous DNA with the recipient chromosome.感受态枯草芽孢杆菌中异源细菌DNA的分子命运。II. 异源DNA与受体染色体的不稳定结合。
Genetics. 1982 Nov;102(3):329-40. doi: 10.1093/genetics/102.3.329.
3
Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis. I. Processing of B. pumilus and B. licheniformis DNA in B. subtilis.感受态枯草芽孢杆菌中异源细菌DNA的分子命运。I. 短小芽孢杆菌和地衣芽孢杆菌DNA在枯草芽孢杆菌中的加工处理
Genetics. 1982 Jun;101(2):179-88. doi: 10.1093/genetics/101.2.179.
4
Heterospecific transformation in the genus Haemophilus.嗜血杆菌属中的异种特异性转化。
Mol Gen Genet. 1984;193(2):358-63. doi: 10.1007/BF00330693.
5
Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis: further characterization of unstable association between donor and recipient DNA and the involvement of the cellular membrane.感受态枯草芽孢杆菌中异源细菌DNA的分子命运：供体与受体DNA之间不稳定关联的进一步表征及细胞膜的作用
Mol Gen Genet. 1984;195(1-2):200-8. doi: 10.1007/BF00332747.
6
An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation.一个11个碱基对的序列决定了嗜血杆菌转化中DNA摄取的特异性。
Gene. 1980 Nov;11(3-4):311-8. doi: 10.1016/0378-1119(80)90071-2.
7
Genetic studies on site-specific endodeoxyribonucleases in Bacillus subtilis: multiple modification and restriction systems in transformants of Bacillus subtilis 168.枯草芽孢杆菌中位点特异性脱氧核糖核酸内切酶的遗传学研究：枯草芽孢杆菌168转化子中的多种修饰和限制系统
Mol Gen Genet. 1980 Feb;177(3):359-68. doi: 10.1007/BF00271474.
8
Interspecies transformation between Bacillus subtilis and Bacillus licheniformis.枯草芽孢杆菌与地衣芽孢杆菌之间的种间转化。
Biochem Biophys Res Commun. 1966 May 25;23(4):543-8.
9
Gene conservation in Bacillus species. I. Conserved genetic and nucleic acid base sequence homologies.芽孢杆菌属中的基因保守性。I. 保守的遗传和核酸碱基序列同源性。
Proc Natl Acad Sci U S A. 1965 Aug;54(2):491-8. doi: 10.1073/pnas.54.2.491.
10
Interspecific transformation of rifampicin resistance in the genus Bacillus.芽孢杆菌属中利福平耐药性的种间转化
Mol Gen Genet. 1973 Jan 24;120(2):151-5. doi: 10.1007/BF00267243.
Zotero 插件