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马铃薯的U6小核RNA基因家族。

The U6 small nuclear RNA gene family of potato.

作者信息

Guerineau F, Waugh R

机构信息

Scottish Crop Research Institute, Invergowrie, Dundee, UK.

出版信息

Plant Mol Biol. 1993 Aug;22(5):807-18. doi: 10.1007/BF00027367.

DOI:10.1007/BF00027367
PMID:8358031
Abstract

Using the inverse polymerase chain reaction (IPCR), 19 U6snRNA gene promoters were isolated from the potato genome. Analysis of their nucleotide sequences revealed the existence of two subfamilies. Promoters from class 1 harbour the typical sequence elements required for plant snRNA gene transcription whereas those from class 2 do not have a TATA box. Three promoters were fused to a modified U6snRNA-coding sequence to allow their activity to be monitored in tobacco protoplasts. Two of the promoters, one from either class, were found to be active. Comparison of potato U6snRNA gene promoter sequences with those found in other plant species showed various degrees of homology. In addition, the entire nucleotide sequences of seven potato U6snRNA genes and one pseudogene were determined. The overall frequency of nucleotide changes after PCR was found to be 1.15 x 10(-3). The mutations appeared to be clustered in a distinct area and were all A-to-G/T-to-C substitutions.

摘要

利用反向聚合酶链反应(IPCR),从马铃薯基因组中分离出19个U6snRNA基因启动子。对其核苷酸序列的分析揭示了两个亚家族的存在。1类启动子含有植物snRNA基因转录所需的典型序列元件,而2类启动子没有TATA框。将三个启动子与修饰的U6snRNA编码序列融合,以便在烟草原生质体中监测它们的活性。发现其中两个启动子有活性,每个类各一个。将马铃薯U6snRNA基因启动子序列与其他植物物种中的启动子序列进行比较,发现它们具有不同程度的同源性。此外,还测定了7个马铃薯U6snRNA基因和1个假基因的完整核苷酸序列。发现PCR后核苷酸变化的总体频率为1.15×10⁻³。这些突变似乎聚集在一个特定区域,并且都是A到G/T到C的替换。

相似文献

1
The U6 small nuclear RNA gene family of potato.马铃薯的U6小核RNA基因家族。
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2
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A family of wheat embryo U2 snRNAs.小麦胚 U2 snRNA 家族。
Plant Mol Biol. 1985 Mar;4(2-3):181-93. doi: 10.1007/BF02418765.
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Structure of U2 snRNA genes of Arabidopsis thaliana and their expression in electroporated plant protoplasts.拟南芥 U2 snRNA 基因的结构及其在电穿孔植物原生质体中的表达。
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U1, U2 and U5 small nuclear RNAs are found in plants cells. Complete nucleotide sequence of the U5 RNA family from pea nuclei.U1、U2和U5小核RNA存在于植物细胞中。豌豆细胞核U5 RNA家族的完整核苷酸序列。
Nucleic Acids Res. 1983 Dec 20;11(24):8583-94. doi: 10.1093/nar/11.24.8583.
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U6 small nuclear RNA is transcribed by RNA polymerase III.U6小核RNA由RNA聚合酶III转录。
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Plant small nuclear RNAs. V. U4 RNA is present in broad bean plants in the form of sequence variants and is base-paired with U6 RNA.植物小核RNA。V. U4 RNA以序列变体的形式存在于蚕豆植物中,并与U6 RNA碱基配对。
Nucleic Acids Res. 1988 Jun 24;16(12):5407-26. doi: 10.1093/nar/16.12.5407.
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Upstream regulatory elements are necessary and sufficient for transcription of a U6 RNA gene by RNA polymerase III.上游调控元件对于RNA聚合酶III转录U6 RNA基因而言是必需且充分的。
EMBO J. 1988 Feb;7(2):503-12. doi: 10.1002/j.1460-2075.1988.tb02838.x.
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Double stranded DNA sequencing as a choice for DNA sequencing.双链DNA测序作为DNA测序的一种选择。
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Structure and expression of the U5 snRNA gene of Arabidopsis thaliana. Conserved upstream sequence elements in plant U-RNA genes.拟南芥U5小核RNA基因的结构与表达。植物U-RNA基因中的保守上游序列元件。
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