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T4溶菌酶Ser 117→Phe热稳定突变体中的疏水核心重新排列及芳香-芳香相互作用

Hydrophobic core repacking and aromatic-aromatic interaction in the thermostable mutant of T4 lysozyme Ser 117-->Phe.

作者信息

Anderson D E, Hurley J H, Nicholson H, Baase W A, Matthews B W

机构信息

Institute of Molecular Biology, Howard Hughes Medical Institute, University of Oregon, Eugene 97403.

出版信息

Protein Sci. 1993 Aug;2(8):1285-90. doi: 10.1002/pro.5560020811.

DOI:10.1002/pro.5560020811
PMID:8401213
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2142442/
Abstract

The T4 lysozyme mutant Ser 117-->Phe was isolated fortuitously and found to be more thermostable than wild-type by 1.1-1.4 kcal/mol. In the wild-type structure, the side chain of Ser 117 is in a sterically restricted region near the protein surface and forms a short hydrogen bond with Asn 132. The crystal structure of the S117F mutant shows that the introduced Phe side chain rotates by about 150 degrees about the C alpha-C beta bond relative to wild type and is buried in the hydrophobic core of the protein. Burial of Phe 117 is accommodated by rearrangements of the surrounding side chains of Leu 121, Leu 133, and Phe 153 and by main-chain shifts, which result in a minimal increase in packing density. The benzyl rings of Phe 117 and Phe 153 form a near-optimal edge-face interaction in the mutant structure. This aromatic-aromatic interaction, as well as increased hydrophobic stabilization and elimination of a close contact in the wild-type protein, apparently compensate for the loss of a hydrogen bond and the possible cost of structural rearrangements in the mutant. The structure illustrates the ability of a protein to accommodate a surprisingly large structural change in a manner that actually increases thermal stability. The mutant has activity about 10% that of wild-type, supportive of the prior hypothesis (Grütter, M.G. & Matthews, B.W., 1982, J. Mol. Biol. 154, 525-535) that the peptidoglycan substrate of T4 lysozyme makes extended contacts with the C-terminal domain in the vicinity of Ser 117.

摘要

T4溶菌酶突变体Ser 117→Phe是偶然分离得到的,发现其比野生型的热稳定性高1.1 - 1.4千卡/摩尔。在野生型结构中,Ser 117的侧链位于蛋白质表面附近空间受限的区域,并与Asn 132形成一个短氢键。S117F突变体的晶体结构表明,引入的Phe侧链相对于野生型绕Cα - Cβ键旋转约150度,并埋入蛋白质的疏水核心。Phe 117的掩埋是通过Leu 121、Leu 133和Phe 153周围侧链的重排以及主链的移动来实现的,这导致堆积密度略有增加。在突变体结构中,Phe 117和Phe 153的苄基环形成了近乎最佳的边 - 面相互作用。这种芳香 - 芳香相互作用,以及增加的疏水稳定性和野生型蛋白质中紧密接触的消除,显然补偿了氢键的损失以及突变体中结构重排可能产生的代价。该结构说明了蛋白质以实际上增加热稳定性的方式适应惊人的大结构变化的能力。该突变体具有约为野生型10%的活性,支持了先前的假设(格鲁特,M.G. & 马修斯,B.W.,1982年,《分子生物学杂志》154卷,525 - 535页),即T4溶菌酶的肽聚糖底物在Ser 117附近与C末端结构域有广泛接触。