Balasubramanian S, Lambright D G, Marden M C, Boxer S G
Department of Chemistry, Stanford University, California 94305-5080.
Biochemistry. 1993 Mar 9;32(9):2202-12. doi: 10.1021/bi00060a011.
The kinetics of CO recombination to site-specific mutants of human myoglobin have been studied by flash photolysis in the temperature range 250-320 K on the nanosecond to second time scale in 75% glycerol at pH 7. The mutants were constructed to examine specific proposals concerning the roles of Lys 45, Asp 60, and Val 68 in the ligand binding process. It is found that ligand recombination is nonexponential for all the mutants and that both the geminate amplitude and rate show large variations. The results are interpreted in terms of specific models connecting the dynamics and structure. It is shown that removal of the charged group at position 45 does not substantially affect the barrier height for escape or entry of the ligand; therefore the breakage of the salt bridge linking Lys 45, Asp 60, and a heme propionate is ruled out as the rate-determining barrier for this process. On the other hand, it is found that the escape barrier decreases roughly as size of the residue at position 68 increases, in the order Ala > Val > Asn > Leu. The residue at position 68 is also a major contributor to the final barrier to rebinding, but the barrier height shows no correlation with residue size and is more dependent on the stereochemistry of the residue. A molecular mechanism for ligand binding that is consistent with the results is discussed, and supporting evidence for this mechanism is examined.
在pH 7的75%甘油中,于250 - 320 K温度范围内,通过纳秒至秒时间尺度的闪光光解研究了一氧化碳与人肌红蛋白位点特异性突变体的重组动力学。构建这些突变体是为了检验有关赖氨酸45、天冬氨酸60和缬氨酸68在配体结合过程中作用的具体假设。结果发现,所有突变体的配体重组均不符合指数规律,且双生振幅和速率都有很大变化。根据连接动力学和结构的具体模型对结果进行了解释。结果表明,去除45位的带电基团对配体逃逸或进入的势垒高度没有实质性影响;因此,排除了连接赖氨酸45、天冬氨酸60和一个血红素丙酸酯的盐桥断裂是该过程速率决定势垒的可能性。另一方面,发现逃逸势垒大致随着68位残基大小的增加而降低,顺序为丙氨酸>缬氨酸>天冬酰胺>亮氨酸。68位的残基也是再结合最终势垒的主要贡献者,但势垒高度与残基大小无关,更多地取决于残基的立体化学。讨论了与结果一致的配体结合分子机制,并研究了支持该机制的证据。