Van de Peer Y, De Wachter R
Departement Biochemie, Universiteit Antwerpen (UIA), Belgium.
Comput Appl Biosci. 1993 Apr;9(2):177-82. doi: 10.1093/bioinformatics/9.2.177.
A package of programs (run by a management program called TREECON) was developed for the construction and drawing of evolutionary trees. The program MATRIX calculates dissimilarity values and can perform boostrap analysis on nucleic acid sequences. TREE implements different evolutionary tree constructing methods based on distance matrices. Because some of these methods produce unrooted evolutionary trees, a program ROOT places a root on the tree. Finally, the program DRAW draws the evolutionary tree, changes its size or topology, and produces drawings suitable for publication. Whereas, MATRIX is suited only for nucleic acids, the modules TREE, ROOT and DRAW are applicable to any kind of dissimilarity matrix. The programs run on IBM-compatible microcomputers using the DOS operating system.
开发了一组程序(由名为TREECON的管理程序运行)用于构建和绘制进化树。MATRIX程序计算差异值,并可对核酸序列进行自展分析。TREE程序基于距离矩阵实现不同的进化树构建方法。由于其中一些方法产生无根进化树,ROOT程序会在树上放置一个根。最后,DRAW程序绘制进化树,更改其大小或拓扑结构,并生成适合发表的绘图。然而,MATRIX仅适用于核酸,而TREE、ROOT和DRAW模块适用于任何类型的差异矩阵。这些程序在使用DOS操作系统的IBM兼容微型计算机上运行。