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玉米叶绿体基因组中一个渐渗操纵子的共转录模式,该操纵子包含四个ATP合酶亚基基因和核糖体rps2。

Co-transcription pattern of an introgressed operon in the maize chloroplast genome comprising four ATP synthase subunit genes and the ribosomal rps2.

作者信息

Stahl D J, Rodermel S R, Bogorad L, Subramanian A R

机构信息

Max Planck Institute for Molecular Genetics, Berlin, FRG.

出版信息

Plant Mol Biol. 1993 Mar;21(6):1069-76. doi: 10.1007/BF00023603.

DOI:10.1007/BF00023603
PMID:8490127
Abstract

Several examples of the introduction of a gene from one gene complex into another (introgression) are found when chloroplast RP gene clusters are compared to those in Escherichia coli or cyanobacteria. Here we describe the transcript pattern of one such cluster from maize (Zea mays) that includes the genes for 4 subunits of the thylakoid ATP synthase (atpI, H, F, A) and the rps2 gene. Twelve transcript species covering the size range from 7,000 to 800 nt were identified in RNA isolated from dark-grown and greening maize seedlings, and several of them were characterized by reverse transcription analysis. A major species of 6,200 nt, with its 5' end at 181 nt upstream of the initiating ATG of rps2, contained the transcripts of all the 5 genes. Two further sets of transcripts having their 5' ends ca. 120 and 50 nt upstream of the initiation codons of the atpI and atpH genes were also identified. Thus, this plastid gene cluster in maize is functionally organized as an operon with additional regulatory features to allow for increased accumulation of mRNAs for the thylakoid components.

摘要

当将叶绿体RP基因簇与大肠杆菌或蓝细菌中的基因簇进行比较时,会发现几个将一个基因复合体中的基因导入另一个基因复合体(基因渐渗)的例子。在这里,我们描述了来自玉米(Zea mays)的一个这样的基因簇的转录模式,该基因簇包括类囊体ATP合酶4个亚基(atpI、H、F、A)的基因以及rps2基因。在从黑暗生长和正在变绿的玉米幼苗中分离的RNA中鉴定出了12种转录本,其大小范围从7000到800 nt,其中几种通过逆转录分析进行了表征。一种主要的6200 nt转录本,其5'端位于rps2起始ATG上游181 nt处,包含了所有5个基因的转录本。还鉴定出另外两组转录本,其5'端分别位于atpI和atpH基因起始密码子上游约120和50 nt处。因此,玉米中的这个质体基因簇在功能上被组织成一个操纵子,具有额外的调控特征,以允许增加类囊体成分mRNA的积累。

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Co-transcription pattern of an introgressed operon in the maize chloroplast genome comprising four ATP synthase subunit genes and the ribosomal rps2.玉米叶绿体基因组中一个渐渗操纵子的共转录模式,该操纵子包含四个ATP合酶亚基基因和核糖体rps2。
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本文引用的文献

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A detailed restriction endonuclease site map of theZea mays plastid genome.玉米质体基因组的详细限制内切酶位点图谱。
Plant Mol Biol. 1983 May;2(3):129-40. doi: 10.1007/BF01578513.
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Nucleotide sequence of maize chloroplast rpl32: completing the apparent set of plastid ribosomal protein genes and their tentative operon organization.玉米叶绿体rpl32的核苷酸序列:完成质体核糖体蛋白基因的明显集合及其初步操纵子组织
Plant Mol Biol. 1993 Feb;21(3):543-8. doi: 10.1007/BF00028811.
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DNA sequence around the Escherichia coli unc operon. Completion of the sequence of a 17 kilobase segment containing asnA, oriC, unc, glmS and phoS.
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质体 σ 因子在高等植物中的功能:调控基因表达还是仅仅维持组成型转录?
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EMBO J. 2009 Jul 22;28(14):2042-52. doi: 10.1038/emboj.2009.121. Epub 2009 May 7.
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A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis.Whirly家族的一个成员是一种多功能的RNA和DNA结合蛋白,对叶绿体生物发生至关重要。
Nucleic Acids Res. 2008 Sep;36(16):5152-65. doi: 10.1093/nar/gkn492. Epub 2008 Aug 2.
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The complete nucleotide sequence of the cassava (Manihot esculenta) chloroplast genome and the evolution of atpF in Malpighiales: RNA editing and multiple losses of a group II intron.木薯(Manihot esculenta)叶绿体基因组的完整核苷酸序列以及锦葵目植物中atpF的进化:RNA编辑与II类内含子的多次丢失
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RNA-protein complexes that form in the spinach chloroplast atpI 5' untranslated region can be divided into two subcomplexes, each comprised of unique cis-elements and trans-factors.在菠菜叶绿体atpI 5'非翻译区形成的RNA-蛋白质复合物可分为两个亚复合物,每个亚复合物由独特的顺式元件和反式因子组成。
Curr Genet. 2005 Oct;48(4):256-64. doi: 10.1007/s00294-005-0007-4. Epub 2005 Nov 4.
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Maize BMS cultured cell lines survive with massive plastid gene loss.玉米BMS培养细胞系在大量质体基因丢失的情况下仍能存活。
Curr Genet. 2003 Nov;44(2):104-13. doi: 10.1007/s00294-003-0408-1. Epub 2003 Jun 13.
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A nuclear gene in maize required for the translation of the chloroplast atpB/E mRNA.玉米中叶绿体atpB/E mRNA翻译所需的一个核基因。
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RNA processing alters open reading frame stoichiometry from the large ATP synthase gene cluster of spinach chloroplasts.RNA加工改变了菠菜叶绿体大型ATP合酶基因簇的开放阅读框化学计量。
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大肠杆菌unc操纵子周围的DNA序列。包含天冬酰胺合成酶A(asnA)、复制起点(oriC)、unc、葡糖胺-6-磷酸合成酶(glmS)和磷酸酶S(phoS)的17千碱基片段序列的完成。
Biochem J. 1984 Dec 15;224(3):799-815. doi: 10.1042/bj2240799.
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Organization and nucleotide sequence of a new ribosomal operon in Escherichia coli containing the genes for ribosomal protein S2 and elongation factor Ts.大肠杆菌中一个新的核糖体操纵子的组织和核苷酸序列,该操纵子包含核糖体蛋白S2和延伸因子Ts的基因。
Nucleic Acids Res. 1981 Aug 25;9(16):4163-72. doi: 10.1093/nar/9.16.4163.
5
Structure and expression of the gene coding for the alpha-subunit of DNA-dependent RNA polymerase from the chloroplast genome of Zea mays.来自玉米叶绿体基因组的依赖DNA的RNA聚合酶α亚基编码基因的结构与表达
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The organization and sequence of the genes for ATP synthase subunits in the cyanobacterium Synechococcus 6301. Support for an endosymbiotic origin of chloroplasts.集胞藻6301中ATP合酶亚基基因的组织和序列。对叶绿体共生起源的支持。
J Mol Biol. 1987 Apr 5;194(3):359-83. doi: 10.1016/0022-2836(87)90667-x.
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Maize plastid photogenes: mapping and photoregulation of transcript levels during light-induced development.玉米质体光基因:光诱导发育过程中转录水平的定位与光调节
J Cell Biol. 1985 Feb;100(2):463-76. doi: 10.1083/jcb.100.2.463.
8
Molecular evolution and nucleotide sequences of the maize plastid genes for the alpha subunit of CF1 (atpA) and the proteolipid subunit of CF0 (atpH).玉米叶绿体基因CF1的α亚基(atpA)和CF0的蛋白脂质亚基(atpH)的分子进化与核苷酸序列
Genetics. 1987 May;116(1):127-39. doi: 10.1093/genetics/116.1.127.
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Molecular cloning and expression of ribosome releasing factor.
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10
A gene cluster in the spinach and pea chloroplast genomes encoding one CF1 and three CF0 subunits of the H+-ATP synthase complex and the ribosomal protein S2.菠菜和豌豆叶绿体基因组中的一个基因簇,编码H⁺-ATP合酶复合体的一个CF1亚基和三个CF0亚基以及核糖体蛋白S2。
J Mol Biol. 1987 Jul 20;196(2):283-98. doi: 10.1016/0022-2836(87)90690-5.