Matsumura I, Kirsch J F
Department of Molecular and Cell Biology, University of California, Berkeley 94720, USA.
Biochemistry. 1996 Feb 13;35(6):1890-6. doi: 10.1021/bi951672i.
The X-ray structure of a chicken egg white lysozyme (ChEWL) complex with a peptidoglycan-derived inhibitor suggests that interactions of Asn46 and Asp52 with the D-subsite N-acetylmuramic acid residue help to distort that pyranose ring into the reactive half-chair conformation and that a hydrogen bond is formed between Asn46 and Asp52 [Strynadka, N. C. J., & James, M. N. G. (1991) J. Mol. Biol. 220, 401-424]. These hypotheses were investigated through the D52A, N46A, and D52A/N46A mutants of ChEWL. The Michaelis constants of the D52A and D52A/N46A ChEWL complexes with Micrococcus luteus cells are 3- and 4-fold higher, respectively, than the wild-type KM; the corresponding kcat values are 25- and 50-fold lower, respectively, than the wild-type kcat. These results support the proposal of Strynadka and James. The velocities of reactions catalyzed by the N46A and D52A mutants are approximately equal to each other for all classes of substrate, suggesting that the respective roles of Asn46 and Asp52 in transition state stabilization do not vary. The mutation of either Asn46 or Asp52 to Ala apparently disrupts the interactions of the other (nonmutated) residue with the substrate, supporting the crystallographic evidence of a hydrogen-bond interaction between the two residues. The mutations do not change the values of the dissociation constants of complexes with (carboxymethyl)chitin complexes, suggesting that ground state complexes of ChEWL with chitin-derived substrates differ in conformation from complexes with bacterial peptidoglycans.
鸡卵清溶菌酶(ChEWL)与肽聚糖衍生抑制剂的X射线结构表明,Asn46和Asp52与D亚位点的N - 乙酰胞壁酸残基之间的相互作用有助于将吡喃糖环扭曲成反应性半椅构象,并且Asn46和Asp52之间形成了氢键[Strynadka, N. C. J., & James, M. N. G. (1991) J. Mol. Biol. 220, 401 - 424]。通过ChEWL的D52A、N46A和D52A/N46A突变体对这些假设进行了研究。D52A和D52A/N46A ChEWL复合物与藤黄微球菌细胞的米氏常数分别比野生型KM高3倍和4倍;相应的催化常数kcat值分别比野生型kcat低25倍和50倍。这些结果支持了Strynadka和James的提议。对于所有类型的底物,N46A和D52A突变体催化反应的速度大致相等,这表明Asn46和Asp52在过渡态稳定中的各自作用没有变化。将Asn46或Asp52突变为丙氨酸显然破坏了另一个(未突变)残基与底物的相互作用,这支持了两个残基之间存在氢键相互作用的晶体学证据。这些突变不会改变与(羧甲基)几丁质复合物的解离常数的值,这表明ChEWL与几丁质衍生底物的基态复合物在构象上与与细菌肽聚糖的复合物不同。