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突变型鸡卵清溶菌酶复合物中蛋白质-碳水化合物相互作用及其水解活性的剖析

Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.

作者信息

Maenaka K, Matsushima M, Song H, Sunada F, Watanabe K, Kumagai I

机构信息

Department of Chemistry and Biotechnology, Faculty of Engineering, The University of Tokyo, Japan.

出版信息

J Mol Biol. 1995 Mar 24;247(2):281-93. doi: 10.1006/jmbi.1994.0139.

Abstract

Trp62 in the binding subsite B of hen egg-white lysozyme shows general features often observed in protein-carbohydrate interactions including a stacking interaction and a hydrogen bonding network with water molecules. A previous report by our group showed that the perturbation of these interactions by substitution of Trp62 with tyrosine or phenylalanine affects the substrate binding modes and also enhances the hydrolytic activity. In order to elucidate the relationship between structural and functional changes of these protein-carbohydrate interactions, the Trp62Tyr and Trp62Phe mutants complexed with the substrate analogue, (GlcNAc)3, were analyzed at 1.8 A resolution by X-ray crystallography. The overall structures of the mutant enzymes are indistinguishable from that of the wild type enzyme. Although the wild-type enzyme binds (GlcNAc)3 in only one binding mode (A-B-C), the Trp62Tyr mutant binds (GlcNAc)3 in two binding modes (A-B-C, B-C-D) and the Trp62Phe mutant has an even weaker binding mode. The aromatic rings of Tyr62 and Phe62 maintain their interactions with the carbohydrate molecules, but make fewer stacking interactions with the GlcNAc in the B site than the wild-type enzyme does. The hydroxyl group of Tyr62 interacts weakly with a water molecule which mediates hydrogen bonding in the GlcNAc residues in the B and C sites. The C-6 hydroxyl group of the GlcNAc residue in the C site rotates around the C-5-C-6 bond to complete the hydrogen bond network in the Trp62Tyr mutant-(GlcNAc)3 complex. On the other hand, this hydrogen bonding network does not form in the Trp62Phe mutant-(GlcNAc)3. In addition to these structural studies, the kinetic parameters of the hydrolysis of 4-methylumbelliferyl N-acetyl-chitotriose, ((GlcNAc)3-MeU), have been determined in order to further characterize the enzymatic properties of these mutant lysozymes. This demonstrates that the modulation of the hydrogen bonding network, including the flexible part of the carbohydrate and water molecules and/or the slight reduction of stacking interaction in the B site, alters the binding mode toward the carbohydrate and induces an enhancement of the hydrolytic activity.

摘要

鸡卵清溶菌酶结合亚位点B中的色氨酸62呈现出蛋白质-碳水化合物相互作用中常见的一般特征,包括堆积相互作用以及与水分子形成的氢键网络。我们小组之前的一份报告表明,用酪氨酸或苯丙氨酸取代色氨酸62会干扰这些相互作用,从而影响底物结合模式,还会增强水解活性。为了阐明这些蛋白质-碳水化合物相互作用的结构变化与功能变化之间的关系,我们通过X射线晶体学在1.8埃分辨率下分析了与底物类似物(GlcNAc)3复合的色氨酸62酪氨酸和色氨酸62苯丙氨酸突变体。突变酶的整体结构与野生型酶无法区分。虽然野生型酶仅以一种结合模式(A-B-C)结合(GlcNAc)3,但色氨酸62酪氨酸突变体以两种结合模式(A-B-C、B-C-D)结合(GlcNAc)3,而色氨酸62苯丙氨酸突变体的结合模式甚至更弱。酪氨酸62和苯丙氨酸62的芳香环与碳水化合物分子保持相互作用,但与B位点的GlcNAc的堆积相互作用比野生型酶少。酪氨酸62的羟基与一个水分子弱相互作用,该水分子介导B和C位点中GlcNAc残基的氢键形成。C位点中GlcNAc残基的C-6羟基围绕C-5-C-6键旋转,以完成色氨酸62酪氨酸突变体-(GlcNAc)3复合物中的氢键网络。另一方面,在色氨酸62苯丙氨酸突变体-(GlcNAc)3中不形成这种氢键网络。除了这些结构研究之外,还测定了4-甲基伞形酮基N-乙酰壳三糖((GlcNAc)3-MeU)水解的动力学参数,以进一步表征这些突变溶菌酶的酶学性质。这表明氢键网络的调节,包括碳水化合物和水分子的柔性部分以及/或者B位点堆积相互作用的轻微减少,改变了对碳水化合物的结合模式并诱导水解活性增强。

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