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通过对聚合酶链反应(PCR)产物进行直接测序来鉴定人类T细胞受体α/δ(TCRA/D)可变基因中的DNA多态性。

Identifying DNA polymorphisms in human TCRA/D variable genes by direct sequencing of PCR products.

作者信息

Boysen C, Carlson C, Hood E, Hood L, Nickerson D A

机构信息

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

出版信息

Immunogenetics. 1996;44(2):121-7.

PMID:8662074
Abstract

The T-cell receptor (TCR) is a highly variable molecule composed of two polypeptide chains that recognize antigenic peptides in the context of major histocompatibility complex (MHC) molecules. In this study, we describe a sequence-based search for germline polymorphisms in the variable (V) gene segments of the human TCRA/D locus. Thirty different V gene segments were amplified from six to eight unrelated individuals and sequenced from low melting point agarose. Twenty-seven polymorphisms were identified in 15 V gene segments. These polymorphisms are mainly single nucleotide substitutions, but an insertion/deletion polymorphism and a single dinucleotide repeat with variable length were also seen. Of the 15 sequence variations found in the coding regions, six are silent and nine encode amino acid changes. All of the amino acid changes are found at non-conserved residues, frequently in the hypervariable regions, where they may influence MHC and/or peptide recognition. Therefore, it is possible that germline variations in TCR genes could influence an individual's immune response, and may also contribute to susceptibility to diseases such as autoimmunity.

摘要

T细胞受体(TCR)是一种高度可变的分子,由两条多肽链组成,可在主要组织相容性复合体(MHC)分子的背景下识别抗原肽。在本研究中,我们描述了一种基于序列的方法,用于搜索人类TCRA/D基因座可变(V)基因片段中的种系多态性。从六至八名无关个体中扩增出30个不同的V基因片段,并从低熔点琼脂糖中进行测序。在15个V基因片段中鉴定出27个多态性。这些多态性主要是单核苷酸替换,但也发现了一个插入/缺失多态性和一个长度可变的单二核苷酸重复序列。在编码区发现的15个序列变异中,6个是沉默变异,9个编码氨基酸变化。所有氨基酸变化均出现在非保守残基处,常见于高变区,在这些区域它们可能影响MHC和/或肽的识别。因此,TCR基因的种系变异有可能影响个体的免疫反应,也可能导致自身免疫等疾病的易感性。

相似文献

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Identifying DNA polymorphisms in human TCRA/D variable genes by direct sequencing of PCR products.通过对聚合酶链反应(PCR)产物进行直接测序来鉴定人类T细胞受体α/δ(TCRA/D)可变基因中的DNA多态性。
Immunogenetics. 1996;44(2):121-7.
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Systematic study of human alpha beta T cell receptor V segments shows allelic variations resulting in a large number of distinct T cell receptor haplotypes.对人类αβ T细胞受体V基因片段的系统研究显示,等位基因变异导致大量不同的T细胞受体单倍型。
Eur J Immunol. 1993 Jun;23(6):1277-83. doi: 10.1002/eji.1830230613.
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T cell signaling abnormalities in systemic lupus erythematosus are associated with increased mutations/polymorphisms and splice variants of T cell receptor zeta chain messenger RNA.系统性红斑狼疮中的T细胞信号异常与T细胞受体ζ链信使核糖核酸的突变/多态性增加及剪接变体有关。
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Interaction between certain major histocompatibility complex class II and T-cell receptor V beta alleles promotes the antibody production to extractable nuclear antigen-related peptides.某些主要组织相容性复合体II类分子与T细胞受体Vβ等位基因之间的相互作用促进了针对可提取核抗原相关肽的抗体产生。
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T cell receptor CDR3 loop length repertoire is determined primarily by features of the V(D)J recombination reaction.T细胞受体CDR3环长度谱主要由V(D)J重组反应的特征决定。
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引用本文的文献

1
Sequence diversity, natural selection and linkage disequilibrium in the human T cell receptor alpha/delta locus.人类T细胞受体α/δ基因座中的序列多样性、自然选择和连锁不平衡
Hum Genet. 2006 Apr;119(3):255-66. doi: 10.1007/s00439-005-0111-z. Epub 2006 Jan 20.
2
Sequence-tagged connectors: a sequence approach to mapping and scanning the human genome.序列标签连接物:一种用于绘制和扫描人类基因组的序列方法。
Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9739-44. doi: 10.1073/pnas.96.17.9739.
3
PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing.
PolyPhred:利用基于荧光的重测序技术自动检测单核苷酸替换并进行基因分型。
Nucleic Acids Res. 1997 Jul 15;25(14):2745-51. doi: 10.1093/nar/25.14.2745.