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噬菌体T4核糖核酸酶H的结构,一种5'至3'的RNA-DNA和DNA-DNA核酸外切酶,与真核生物蛋白质的RAD2家族具有序列相似性。

Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins.

作者信息

Mueser T C, Nossal N G, Hyde C C

机构信息

Laboratory of Structural Biology Research, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland 20892-2755, USA.

出版信息

Cell. 1996 Jun 28;85(7):1101-12. doi: 10.1016/s0092-8674(00)81310-0.

DOI:10.1016/s0092-8674(00)81310-0
PMID:8674116
Abstract

Bacteriophage T4 RNase H is a 5' to 3' exonuclease that removes RNA primers from the lagging strand of the DNA replication fork and is a member of the RAD2 family of eukaryotic and prokaryotic replication and repair nucleases. The crystal structure of the full-length native form of T4 RNase H has been solved at 2.06 angstroms resolution in the presence of Mg2+ but in the absence of nucleic acids. The most conserved residues are clustered together in a large cleft with two Mg2+ in the proposed active site. This structure suggests the way in which the widely separated conserved regions in the larger nucleotide excision repair proteins, such as human XPG, could assemble into a structure like that of the smaller replication nucleases.

摘要

噬菌体T4核糖核酸酶H是一种5'至3'核酸外切酶,可从DNA复制叉的滞后链上去除RNA引物,它是真核和原核复制及修复核酸酶的RAD2家族成员。T4核糖核酸酶H全长天然形式的晶体结构已在存在Mg2+但不存在核酸的情况下以2.06埃的分辨率解析出来。最保守的残基聚集在一个大裂缝中,在假定的活性位点有两个Mg2+。这种结构表明,较大的核苷酸切除修复蛋白(如人类XPG)中广泛分离的保守区域可能组装成类似较小复制核酸酶的结构的方式。

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1
Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins.噬菌体T4核糖核酸酶H的结构,一种5'至3'的RNA-DNA和DNA-DNA核酸外切酶,与真核生物蛋白质的RAD2家族具有序列相似性。
Cell. 1996 Jun 28;85(7):1101-12. doi: 10.1016/s0092-8674(00)81310-0.
2
Identification of residues of T4 RNase H required for catalysis and DNA binding.催化作用和DNA结合所需的T4核糖核酸酶H残基的鉴定。
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Crystal structure of bacteriophage T4 5' nuclease in complex with a branched DNA reveals how flap endonuclease-1 family nucleases bind their substrates.与分支DNA结合的噬菌体T4 5'核酸酶的晶体结构揭示了 flap内切核酸酶-1家族核酸酶如何结合其底物。
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Bacteriophage T4 RNase H removes both RNA primers and adjacent DNA from the 5' end of lagging strand fragments.噬菌体T4核糖核酸酶H从滞后链片段的5'端去除RNA引物和相邻的DNA。
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A novel DNA-binding motif shares structural homology to DNA replication and repair nucleases and polymerases.一种新型的DNA结合基序与DNA复制及修复核酸酶和聚合酶具有结构同源性。
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Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase.噬菌体T4 DNA聚合酶的引物-模板DNA链的核酸外切酶-聚合酶活性位点分区及Mg2+平衡结合特性
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The 5'-exonuclease activity of bacteriophage T4 RNase H is stimulated by the T4 gene 32 single-stranded DNA-binding protein, but its flap endonuclease is inhibited.噬菌体T4核糖核酸酶H的5'-核酸外切酶活性受T4基因32单链DNA结合蛋白的刺激,但其瓣状内切核酸酶受到抑制。
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Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9 degrees N-7.嗜热古菌嗜热栖热菌9°N - 7来源的聚合酶α家族DNA聚合酶的晶体结构
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Functional consequences and exonuclease kinetic parameters of point mutations in bacteriophage T4 DNA polymerase.噬菌体T4 DNA聚合酶中位点突变的功能后果及核酸外切酶动力学参数
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Maturation of bacteriophage T4 lagging strand fragments depends on interaction of T4 RNase H with T4 32 protein rather than the T4 gene 45 clamp.噬菌体T4滞后链片段的成熟取决于T4核糖核酸酶H与T4 32蛋白的相互作用,而非T4基因45夹子。
J Biol Chem. 2005 Apr 1;280(13):12876-87. doi: 10.1074/jbc.M414025200. Epub 2005 Jan 18.

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