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来自标准化成人胸腺cDNA文库的克隆的染色体定位及表达序列标签的生成

Chromosomal localization and expressed sequence tag generation of clones from a normalized human adult thymus cDNA library.

作者信息

Lamerdin J E, Athwal R S, Kansara M S, Sandhu A K, Patanjali S R, Weissman S M, Carrano A V

机构信息

Human Genome Center, Lawrence Livermore National Laboratory, Livermore, California 94550, USA.

出版信息

Genome Res. 1995 Nov;5(4):359-67. doi: 10.1101/gr.5.4.359.

Abstract

Expressed sequence tags (ESTs) from 298 clones have been generated from a randomly primed, normalized human adult thymus cDNA library. We describe the chromosomal localization of 136 of these ESTs by PCR-based mapping to a human monochromosomal somatic cell hybrid panel. Data base similarities to known genes are also described. A subset (n = 18) of these randomly primed ESTs extended the sequence of ESTs from other tissues currently in dbEST. Of the nonrepetitive human adult thymus ESTs generated in this study, 237 (79.5%) have no similarity to current data base entries. This would suggest that our collection contains approximately 100 new coding regions from thymus tissue, a large proportion of which likely will represent the middle regions of genes. The mapped ESTs should prove useful as new gene-based markers for mapping and candidate gene hunting, particularly when anchored to a well-developed physical map of the human genome.

摘要

已从一个经随机引物法构建并标准化的人类成人胸腺cDNA文库中,获得了来自298个克隆的表达序列标签(EST)。我们通过基于PCR的定位方法,将其中136个EST定位到人类单染色体体细胞杂种板上,描述了它们的染色体定位情况。同时也描述了与已知基因在数据库中的相似性。这些随机引物法产生的EST中有一个子集(n = 18)扩展了dbEST中目前来自其他组织的EST序列。在本研究中产生的非重复人类成人胸腺EST中,有237个(79.5%)与当前数据库条目无相似性。这表明我们的文库包含约100个来自胸腺组织的新编码区,其中很大一部分可能代表基因的中间区域。这些定位的EST作为基于新基因的标记,对于图谱绘制和候选基因搜寻应是有用的,特别是当它们锚定到完善的人类基因组物理图谱上时。

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