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嗜温紫色硫细菌嗜温嗜硫色杆菌初级供体的氢键相互作用。

Hydrogen-bond interactions of the primary donor of the photosynthetic purple sulfur bacterium Chromatium tepidum.

作者信息

Ivancich A, Kobayashi M, Drepper F, Fathir I, Saito T, Nozawa T, Mattioli T A

机构信息

Section de Biophysique des Protéines et des Membranes, CEA, Gif-sur-Yvette, France.

出版信息

Biochemistry. 1996 Aug 13;35(32):10529-38. doi: 10.1021/bi953047j.

Abstract

We have used near-infrared Fourier transform (pre)resonance Raman spectroscopy to determine the protein interactions with the bacteriochlorophyll (BChl) dimer constituting the primary electron donor, P, in the reaction center (RC) from the thermophilic purple sulfur bacterium Chromatium tepidum. In addition, we report the alignment of partial sequences of the L and M protein subunits of C. tepidum RCs in the vicinity of the primary donor with those of Rhodobacter sphaeroides and Rhodopseudomonas viridis. Taken together, these results enable us to propose the hydrogen-bonding pattern and the H-bond donors to the conjugated carbonyl groups of P. Selective excitation (1064-nm laser radiation) of the FT (pre)-resonance Raman spectra of P in its neutral (P degree) and oxidized (P degree +) states were obtained via their electronic absorption bands at 876 and 1240 nm, respectively. The P degree spectrum exhibits vibrational frequencies at 1608, 1616, 1633, and 1697 cm-1 which bleach upon P oxidation. The P degree + spectrum exhibits new bands at 1600, 1639, and 1719 cm-1. The 1608-cm-1 band, which downshifts to 1600 cm-1 upon oxidation, is assigned to a CaCm methine bridge stretching mode of the P dimer, indicating that each BChl molecule possesses a single axial ligand (His L181 and His M201, from the sequence alignment). The 1616- and 1633-cm-1 bands correspond to two H-bonded pi-conjugated acetyl carbonyl groups of each BChl molecule. with different H-bond strengths: the 1616-cm-1 band is assigned to the PL C2 acetyl group which is H-bonded to a histidine residue (His L176), while the 1633-cm-1 band is assigned to the PM C2 acetyl carbonyl, H-bonded to a tyrosine residue (Tyr M196). Both PL and PM C9 keto carbonyls are free from interactions and vibrate at the same frequency (1697 cm-1). Thus, the H-bond pattern of the primary donor of C. tepidum differs from that of Rb. sphaeroides in the extra H-bond to the PM C2 acetyl carbonyl group; that of PL is H-bonded to a histidine residue in both primary donors (His L168 in Rb. sphaeroides and His L176 in C. tepidum). The P degree/P degree + redox midpoint potentials were measured to be +497 and +526 mV for isolated C. tepidum RCs with and without the associated tetraheme cytochrome c subunit, respectively, and +502 mV for intracytoplasmic membranes. The positive charge localization was estimated to be 69% in favor of PL, indicating a more delocalized situation over the primary donor of C. tepidum than that of Rb. sphaeroides (estimated to be 80% on PL). These differences in physicochemical properties are discussed with respect to the proposed structural model for the microenvironment of the primary donor of C. tepidum.

摘要

我们利用近红外傅里叶变换(预)共振拉曼光谱法来确定蛋白质与嗜热紫色硫细菌嗜热栖热菌反应中心(RC)中构成初级电子供体P的细菌叶绿素(BChl)二聚体之间的相互作用。此外,我们报道了嗜热栖热菌RCs的L和M蛋白亚基在初级供体附近的部分序列与球形红杆菌和绿假单胞菌的序列比对情况。综合这些结果,我们能够提出P的共轭羰基的氢键模式和氢键供体。通过P在其中性(P°)和氧化(P°⁺)状态下分别在876和1240 nm处的电子吸收带,获得了P的FT(预)共振拉曼光谱的选择性激发(1064 nm激光辐射)。P°光谱在1608、1616、1633和1697 cm⁻¹处呈现振动频率,这些频率在P氧化时会发生漂白。P°⁺光谱在1600、1639和1719 cm⁻¹处呈现新的谱带。1608 cm⁻¹的谱带在氧化时向下位移至1600 cm⁻¹,被归属为P二聚体的CaCm次甲基桥伸缩模式,表明每个BChl分子具有一个单一的轴向配体(来自序列比对的His L181和His M201)。1616和1633 cm⁻¹的谱带对应于每个BChl分子的两个氢键连接的π共轭乙酰羰基,具有不同的氢键强度:1616 cm⁻¹的谱带被归属为与组氨酸残基(His L176)形成氢键的PL C2乙酰基,而1633 cm⁻¹的谱带被归属为与酪氨酸残基(Tyr M196)形成氢键的PM C2乙酰羰基。PL和PM的C9酮羰基均无相互作用,以相同频率(1697 cm⁻¹)振动。因此,嗜热栖热菌初级供体的氢键模式与球形红杆菌的不同之处在于,PM C2乙酰羰基存在额外的氢键;PL在两个初级供体中均与组氨酸残基形成氢键(球形红杆菌中的His L168和嗜热栖热菌中的His L176)。对于分离的嗜热栖热菌RCs,有和没有相关的四血红素细胞色素c亚基时,P°/P°⁺氧化还原中点电位分别测量为+497和+526 mV,对于胞内膜为+502 mV。正电荷定位估计为69%偏向PL,表明嗜热栖热菌初级供体上的情况比球形红杆菌更离域(估计PL上为80%)。针对嗜热栖热菌初级供体微环境的提议结构模型,讨论了这些物理化学性质的差异。

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