Suppr超能文献

肌红蛋白活性位点的静电修饰:近端丝氨酸92位点天冬氨酸变体的表征

Electrostatic modification of the active site of myoglobin: characterization of the proximal Ser92Asp variant.

作者信息

Lloyd E, Burk D L, Ferrer J C, Maurus R, Doran J, Carey P R, Brayer G D, Mauk A G

机构信息

Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada.

出版信息

Biochemistry. 1996 Sep 10;35(36):11901-12. doi: 10.1021/bi9608976.

Abstract

The structural and functional consequences of the introduction of a negatively charged amino acid into the active site of horse heart myoglobin have been investigated by replacement of the proximal Ser92 residue (F7) with an aspartyl residue (Ser92Asp). UV-visible absorption maxima of various ferrous and ferric derivatives and low-temperature EPR spectra of the metaquo (metMb) derivative indicate that the active site coordination geometry has not been perturbed significantly in the variant. 1H-NMR spectroscopy provides direct evidence for the existence of a distal water molecule as the sixth ligand in the oxidized form of the variant at pD 5.7. Spectrophotometric pH titration of the Ser92Asp variant is consistent with this finding and with a pKa = 8.90 +/- 0.02 [25.0 degrees C, mu = 0.10 M (NaCl)] for titration of the distal water molecule, identical to the value reported for the wild-type protein. X-ray crystallography of the metMb derivative indicates that the heme substituents conserve their orientations in the variant protein, except for a slight reorientation of the pyrrole A propionate group to which Ser92 normally hydrogen bonds and reorientation of the carboxyl end of the pyrrole D propionate group. No change is observed in conformation of the proximal (His93) or distal (Wat156) heme ligands. 1H-NMR spectroscopy of the metMbCN form of the protein indicates that a slight rotation of the proximal His93 ligand has occurred in this derivative. Resonance Raman experiments indicate increased conformational heterogeneity in the proximal pocket of the variant. Failure to detect electron density for the Asp residue in the X-ray diffraction map of the variant protein and high average thermal factors for the pyrrole A propionate substituent are consistent with this observation. The variant exhibits novel pH-dependent behavior in the metMb form, as shown by 1H-NMR spectroscopy, and provides evidence for a heme-linked titratable group with a pKa of 5.4 in this derivative. The metMbCN and deoxyMb derivatives also exhibit pH-dependent behavior, with pKas of 5.60 +/- 0.07 and 6.60 +/- 0.07, respectively, compared to the wild-type values of 5.4 +/- 0.04 and 5.8 +/- 0.1. The heme-linked ionizable group is proposed to be His97 in all three derivatives. The reduction potential of the variant is 72 +/- 2 mV vs SHE [25.0 degrees C, mu = 0.10 M (phosphate), pH 6.0], an increase of 8 mV over the wild-type value. The possible influence of a number of variables on the magnitude of the reduction potential in myoglobin and other heme proteins is discussed.

摘要

通过将近端的丝氨酸92残基(F7)替换为天冬氨酸残基(Ser92Asp),研究了在马心脏肌红蛋白活性位点引入带负电荷氨基酸的结构和功能后果。各种亚铁和高铁衍生物的紫外可见吸收最大值以及高铁(metMb)衍生物的低温电子顺磁共振光谱表明,变体中的活性位点配位几何结构未受到显著扰动。1H-NMR光谱直接证明了在pD 5.7时变体氧化形式中存在一个远端水分子作为第六个配体。Ser92Asp变体的分光光度pH滴定与这一发现一致,并且滴定远端水分子的pKa = 8.90 +/- 0.02 [25.0℃,μ = 0.10 M(NaCl)],与野生型蛋白报道的值相同。高铁肌红蛋白(metMb)衍生物的X射线晶体学表明,除了与丝氨酸92正常氢键结合的吡咯A丙酸酯基团略有重新定向以及吡咯D丙酸酯基团的羧基末端重新定向外,血红素取代基在变体蛋白中保持其取向。近端(His93)或远端(Wat156)血红素配体的构象未观察到变化。该蛋白的高铁氰化肌红蛋白(metMbCN)形式的1H-NMR光谱表明,在该衍生物中近端His93配体发生了轻微旋转。共振拉曼实验表明变体近端口袋中的构象异质性增加。在变体蛋白的X射线衍射图中未检测到天冬氨酸残基的电子密度以及吡咯A丙酸酯取代基的高平均热因子与这一观察结果一致。如1H-NMR光谱所示,变体在高铁肌红蛋白形式中表现出新颖的pH依赖性行为,并为该衍生物中一个pKa为5.4的血红素连接的可滴定基团提供了证据。高铁氰化肌红蛋白(metMbCN)和脱氧肌红蛋白(deoxyMb)衍生物也表现出pH依赖性行为,其pKa分别为5.60 +/- 0.07和6.60 +/- 0.07,而野生型值分别为5.4 +/- 0.04和5.8 +/- 0.1。在所有三种衍生物中,血红素连接的可电离基团被认为是His97。变体的还原电位相对于标准氢电极(SHE)为72 +/- 2 mV [25.0℃,μ = 0.10 M(磷酸盐),pH 6.0],比野生型值增加了8 mV。讨论了许多变量对肌红蛋白和其他血红素蛋白中还原电位大小的可能影响。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验