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恶性疟原虫基因组计划的现状

Current status of the Plasmodium falciparum genome project.

作者信息

Dame J B, Arnot D E, Bourke P F, Chakrabarti D, Christodoulou Z, Coppel R L, Cowman A F, Craig A G, Fischer K, Foster J, Goodman N, Hinterberg K, Holder A A, Holt D C, Kemp D J, Lanzer M, Lim A, Newbold C I, Ravetch J V, Reddy G R, Rubio J, Schuster S M, Su X Z, Thompson J K, Werner E B

机构信息

University of Florida, Gainesville, 32611, USA.

出版信息

Mol Biochem Parasitol. 1996 Jul;79(1):1-12. doi: 10.1016/0166-6851(96)02641-2.

Abstract

The Plasmodium falciparum Genome Project is a collaborative effort by many laboratories that will provide detailed molecular information about the parasite, which may be used for developing practical control measures. Initial goals are to prepare an electronically indexed clone bank containing partially sequenced clones representing up to 80% of the parasite's genes and to prepare an ordered set of overlapping clones spanning each of the parasite's 14 chromosomes. Currently, clones of genomic DNA, prepared as yeast artificial chromosomes, are arranged into contigs covering approximately 70% of the genome of parasite clone 3D7, gene sequence tags are available from more than contigs covering approximately 70% of the genome of parasite clone 3D7, gene sequence tags are available from more than 20% of the parasite's genes, and approximately 5% of the parasite's genes are tentatively identified from similarity searches of entries in the international sequence databases. A total of > 0.5 Mb of P. falciparum sequence tag data is available. The gene sequence tags are presently being used to complete YAC contig assembly and localize the cloned genes to positions on the physical map in preparation for sequencing the genome. Routes of access to project information and services are described.

摘要

恶性疟原虫基因组计划是众多实验室共同开展的一项工作,它将提供有关该寄生虫的详细分子信息,这些信息可用于制定切实可行的控制措施。最初的目标是建立一个电子索引克隆文库,其中包含部分测序的克隆,这些克隆代表了该寄生虫高达80%的基因,并准备一套有序的重叠克隆,覆盖该寄生虫的14条染色体。目前,作为酵母人工染色体制备的基因组DNA克隆被排列成重叠群,覆盖了寄生虫克隆3D7基因组的约70%,超过20%的寄生虫基因有基因序列标签,并且通过对国际序列数据库条目的相似性搜索初步鉴定出了约5%的寄生虫基因。共有超过0.5 Mb的恶性疟原虫序列标签数据可用。目前,基因序列标签正用于完成酵母人工染色体重叠群组装,并将克隆的基因定位到物理图谱上的位置,为基因组测序做准备。文中还描述了获取项目信息和服务的途径。

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