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通过DNA混合法确定的一个小脑共济失调基因座,用于在开曼群岛的一个隔离人群中寻找连锁不平衡。

A cerebellar ataxia locus identified by DNA pooling to search for linkage disequilibrium in an isolated population from the Cayman Islands.

作者信息

Nystuen A, Benke P J, Merren J, Stone E M, Sheffield V C

机构信息

Department of Pediatrics, University of Iowa, Iowa City 52242, USA.

出版信息

Hum Mol Genet. 1996 Apr;5(4):525-31. doi: 10.1093/hmg/5.4.525.

Abstract

A non-progressive recessive cerebellar ataxia was identified in a highly inbred Cayman island population. Cayman cerebellar ataxia is characterized by marked psychomotor retardation, and prominent cerebellar dysfunction manifested by nystagmus, intention tremor, dysarthric speech, and an ataxic gait. In this study, we identify linkage to chromosome 19p 13.3 using pooled DNA samples of affected individuals from an isolated population as PCR template for a genome wide screen with short tandem repeat markers. Our data demonstrate that the DNA pooling approach to identify disease gene loci is feasible using individuals from isolated populations in which kindred relationships are highly complex and exact relationships between all affected individuals are not known. Genetic fine mapping demonstrates that the genetic disease interval is approximately 9 cM, but contained within a small physical region. The existence of multiple individuals that are recombinant with flanking markers indicates that the disease interval can be further narrowed with additional markers.

摘要

在一个高度近亲繁殖的开曼群岛人群中发现了一种非进行性隐性小脑共济失调。开曼小脑共济失调的特征是明显的精神运动发育迟缓,以及由眼球震颤、意向性震颤、构音障碍和共济失调步态所表现出的明显小脑功能障碍。在本研究中,我们使用来自一个隔离人群中受影响个体的混合DNA样本作为PCR模板,通过短串联重复标记进行全基因组筛选,确定了与19号染色体p13.3区域的连锁关系。我们的数据表明,对于亲属关系高度复杂且所有受影响个体之间的确切关系未知的隔离人群中的个体,采用DNA混合方法来鉴定疾病基因位点是可行的。遗传精细定位表明,该遗传疾病区间约为9厘摩,但包含在一个较小的物理区域内。存在多个与侧翼标记发生重组的个体,这表明使用额外的标记可以进一步缩小疾病区间。

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