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转录脉冲追踪分析揭示了一种新型小核核糖核蛋白相关蛋白在剪接体小核核糖核蛋白合成中的作用。

Transcriptional pulse-chase analysis reveals a role for a novel snRNP-associated protein in the manufacture of spliceosomal snRNPs.

作者信息

Noble S M, Guthrie C

机构信息

Department of Biochemistry and Biophysics, University of California, San Francisco 94143, USA.

出版信息

EMBO J. 1996 Aug 15;15(16):4368-79.

PMID:8861964
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC452161/
Abstract

Vertebrate spliceosomal snRNAs associate with a conserved set of proteins, the Sm proteins, via a conserved RNA sequence, the Sm site. Assembly of this complex is required for the accumulation of stable snRNPs, hypermethylation of the 5' cap structure and nuclear import of the resultant particles. The function of individual core snRNP proteins is poorly understood, in part because of the difficulty of selectively inactivating individual polypeptides in vivo. Using a transcriptional pulse-chase method we have defined for the first time the steps of snRNP biogenesis in Saccharomyces cerevisiae. We describe a novel component of spliceosomal snRNPs, Brr1, which is distinct in sequence from Sm core proteins and yet which shares many of their properties, as well as a genetic interaction with the yeast homolog of Sm D1 core protein. Through a kinetic analysis of snRNP formation in wild-type and brr1 mutant cells we demonstrate specific defects in a subset of steps in the brr1 mutant: newly synthesized snRNAs are destabilized and 3'-end processing is slowed, whereas the cap hypermethylation reaction is unaffected. Notably, the stability of mature particles, as measured by promoter shut-off experiments, is normal in the absence of the Brr1 snRNP protein.

摘要

脊椎动物剪接体snRNA通过保守的RNA序列(Sm位点)与一组保守的蛋白质(Sm蛋白)结合。这种复合物的组装对于稳定snRNP的积累、5'帽结构的超甲基化以及所得颗粒的核输入是必需的。单个核心snRNP蛋白的功能了解甚少,部分原因是在体内选择性地使单个多肽失活存在困难。我们使用转录脉冲追踪方法首次确定了酿酒酵母中snRNP生物发生的步骤。我们描述了剪接体snRNP的一个新组分Brr1,其序列与Sm核心蛋白不同,但具有许多共同特性,并且与Sm D1核心蛋白的酵母同源物存在遗传相互作用。通过对野生型和brr1突变体细胞中snRNP形成的动力学分析,我们证明brr1突变体中一部分步骤存在特定缺陷:新合成的snRNA不稳定,3'端加工减慢,而帽超甲基化反应不受影响。值得注意的是,通过启动子关闭实验测量,在没有Brr1 snRNP蛋白的情况下,成熟颗粒的稳定性正常。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/de409ecb0528/emboj00016-0297-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/69ae9ec87f05/emboj00016-0292-a.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/9b0620d41438/emboj00016-0295-a.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/de409ecb0528/emboj00016-0297-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/69ae9ec87f05/emboj00016-0292-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/f7dd5ac041ea/emboj00016-0293-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/9b0620d41438/emboj00016-0295-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/3ad0b12b2e77/emboj00016-0296-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fd6/452161/de409ecb0528/emboj00016-0297-a.jpg

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U1 small nuclear ribonucleoprotein particle-protein interactions are revealed in Saccharomyces cerevisiae by in vivo competition assays.通过体内竞争试验揭示了酿酒酵母中的U1小核核糖核蛋白颗粒-蛋白质相互作用。
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Convergent transcripts of the yeast PRP38-SMD1 locus encode two essential splicing factors, including the D1 core polypeptide of small nuclear ribonucleoprotein particles.
Gemin2 与 RNA 之间的负协同作用为 RNA 选择和 SMN 复合物在 snRNP 组装中的释放提供了新的见解。
Nucleic Acids Res. 2020 Jan 24;48(2):895-911. doi: 10.1093/nar/gkz1135.
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A Post-Transcriptional Feedback Mechanism for Noise Suppression and Fate Stabilization.转录后反馈机制可用于抑制噪声并稳定命运。
Cell. 2018 Jun 14;173(7):1609-1621.e15. doi: 10.1016/j.cell.2018.04.005. Epub 2018 May 10.
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Environment-dependent regulation of spliceosome activity by the LSM2-8 complex in Arabidopsis.拟南芥中LSM2-8复合体对剪接体活性的环境依赖性调控
Nucleic Acids Res. 2017 Jul 7;45(12):7416-7431. doi: 10.1093/nar/gkx375.
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Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2.圆环会完好无损吗:酵母Sm蛋白环中的特定突变揭示了对装配因子Brr1(Gemin2的同源物)的需求。
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Structure-function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring.酵母Sm蛋白环的SmG、SmE和SmF亚基的结构-功能分析及遗传相互作用
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7
A rapid assay for quantitative detection of specific RNAs.
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8
m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (snRNP) in vitro: evidence that the U1 small nuclear RNA-(guanosine-N2)-methyltransferase is a non-snRNP cytoplasmic protein that requires a binding site on the Sm core domain.体外U1小核核糖核蛋白(snRNP)的m3G帽超甲基化:U1小核RNA -(鸟苷-N2)-甲基转移酶是一种非snRNP细胞质蛋白,需要Sm核心结构域上的结合位点的证据。
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