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未与HyHEL-5 Fab片段结合及结合后的北美鹑溶菌酶的精细结构。

Refined structures of bobwhite quail lysozyme uncomplexed and complexed with the HyHEL-5 Fab fragment.

作者信息

Chacko S, Silverton E W, Smith-Gill S J, Davies D R, Shick K A, Xavier K A, Willson R C, Jeffrey P D, Chang C Y, Sieker L C, Sheriff S

机构信息

Laboratory of Molecular Biology, NIDDK, NIH, Bethesda, Maryland 20895, USA.

出版信息

Proteins. 1996 Sep;26(1):55-65. doi: 10.1002/(SICI)1097-0134(199609)26:1<55::AID-PROT5>3.0.CO;2-F.

Abstract

The HyHEL-5 antibody has more than a thousandfold lower affinity for bobwhite quail lysozyme (BWQL) than for hen egg-white lysozyme (HEL). Four sequence differences exist between BWQL and HEL, of which only one is involved in the interface with the Fab. The structure of bobwhite quail lysozyme has been determined in the uncomplexed state in two different crystal forms and in the complexed state with HyHEL-5, an antihen egg-white lysozyme Fab. Similar backbone conformations are observed in the three molecules of the two crystal forms of uncomplexed BWQL, although they show considerable variability in side-chain conformation. A relatively mobile segment in uncomplexed BWQL is observed to be part of the HyHEL-5 epitope. No major backbone conformational differences are observed in the lysozyme upon complex formation, but side-chain conformational differences are seen in surface residues that are involved in the interface with the antibody. The hydrogen bonding in the interface between BWQL and HyHEL-5 is similar to that in previously determined lysozyme-HyHEL-5 complexes.

摘要

HyHEL-5抗体对北美鹑溶菌酶(BWQL)的亲和力比对鸡蛋清溶菌酶(HEL)的亲和力低一千多倍。BWQL和HEL之间存在四个序列差异,其中只有一个差异涉及与Fab的界面。北美鹑溶菌酶的结构已在两种不同晶体形式的未结合状态以及与抗鸡蛋清溶菌酶Fab即HyHEL-5的结合状态下确定。在未结合的BWQL的两种晶体形式的三个分子中观察到相似的主链构象,尽管它们在侧链构象上表现出相当大的变异性。观察到未结合的BWQL中一个相对可移动的片段是HyHEL-5表位的一部分。在形成复合物后,溶菌酶中未观察到主要的主链构象差异,但在与抗体界面相关的表面残基中观察到了侧链构象差异。BWQL和HyHEL-5之间界面中的氢键与先前确定的溶菌酶-HyHEL-5复合物中的氢键相似。

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