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产气气杆菌中腺苷钴胺素依赖性甘油脱水酶的作用机制研究。I. 腺苷钴胺素的结构成分在甘油脱水酶活性位点形成中的作用。

Study on the mechanism of action of adenosylcobalamin-dependent glycerol dehydratase from Aerobacter aerogenes. I. Role of structural components of adenosylcobalamin the formation of the active site of glycerol dehydratase.

作者信息

Yakusheva M I, Poznanskaya A A, Pospelova T A, Rudakova I P, Yurkevich A M, Yakovlev V A

出版信息

Biochim Biophys Acta. 1977 Sep 15;484(1):216-35. doi: 10.1016/0005-2744(77)90127-9.

DOI:10.1016/0005-2744(77)90127-9
PMID:889845
Abstract

A new method of partial chemical synthesis of adenosylcobalamin (Co alpha-[alpha-5,6-diemethylbenzimidazolyl)]-Co beta-adenosylcobamide, AdoCbl) analogs has been developed. A series of derivatives of AdoCbl modified in the nucleoside and nucleotide ligands and corrin macrocycle have been obtained. The interaction of AdoCl analogs with glycerol dehydratase (EC 4.2.1.30) from Aerobacter aerogenes has been investigated. It has been shown that the nucleoside ligand of AdoCbl provides no essential contribution to the binding of apoenzyme but the preservation of the exact structure of the 1-N and 2-C positions of adenine appears essential for the catalysis. The coordination bond between the Co and nucleotide ligand of AdoCl does not play a decisive role in glycerol dehydratase activity. To form the active site of the glycerol dehydrates, the nucleotide in the AdoCbl structure is essential since nucleotide elimination results in a 100-fold increase of Ki for the corresponding analog. In the binding of AdoCbl with apoenzyme, the main role belongs to the corrin macrocycle, in which the e-propionamide group is significant for binding with apoenzyme, but presumably not essential for catalysis.

摘要

已开发出一种腺苷钴胺素(辅酶α-[α-5,6-二甲基苯并咪唑基)]-辅酶β-腺苷钴胺酰胺,AdoCbl)类似物的部分化学合成新方法。已获得一系列在核苷和核苷酸配体以及咕啉大环中修饰的AdoCbl衍生物。研究了AdoCbl类似物与产气气杆菌甘油脱水酶(EC 4.2.1.30)的相互作用。结果表明,AdoCbl的核苷配体对脱辅基酶的结合没有重要贡献,但腺嘌呤1-N和2-C位置精确结构的保留对催化似乎至关重要。AdoCbl的Co与核苷酸配体之间的配位键在甘油脱水酶活性中不起决定性作用。为了形成甘油脱水酶的活性位点,AdoCbl结构中的核苷酸至关重要,因为去除核苷酸会导致相应类似物的Ki增加100倍。在AdoCbl与脱辅基酶的结合中,主要作用属于咕啉大环,其中ε-丙酰胺基团对于与脱辅基酶的结合很重要,但可能对催化不是必需的。

相似文献

1
Study on the mechanism of action of adenosylcobalamin-dependent glycerol dehydratase from Aerobacter aerogenes. I. Role of structural components of adenosylcobalamin the formation of the active site of glycerol dehydratase.产气气杆菌中腺苷钴胺素依赖性甘油脱水酶的作用机制研究。I. 腺苷钴胺素的结构成分在甘油脱水酶活性位点形成中的作用。
Biochim Biophys Acta. 1977 Sep 15;484(1):216-35. doi: 10.1016/0005-2744(77)90127-9.
2
Study of the mechanism of action of adenosylcobalamindependent glycerol dehydratase from Aerobacter aerogenes. II. The inactivation kinetics of glycerol dehydratase complexes with adenosylobalamin and its analogs.产气气杆菌中腺苷钴胺素依赖性甘油脱水酶的作用机制研究。II. 甘油脱水酶与腺苷钴胺素及其类似物复合物的失活动力学
Biochim Biophys Acta. 1977 Sep 15;484(1):236-43. doi: 10.1016/0005-2744(77)90128-0.
3
[9-(Adenylyl)alkylcobalamins as inhibitors of adenosylcobalamin-dependent glycerol dehydratase from Aerobacter aerogenes].[9-(腺苷酰基)烷基钴胺素作为产气气杆菌中腺苷钴胺素依赖性甘油脱水酶的抑制剂]
Biokhimiia. 1977 Nov;42(11):2086-8.
4
[Effect of the structure of the nucleoside ligand of cobalamines on their enzymatic properties in a glycerol dehydratase system].
Biokhimiia. 1978 Oct;43(10):1873-82.
5
[Effect of environmental factors on inactivation of B12-dependent glycerol dehydratase from Aerobacter aerogenes].[环境因素对产气气杆菌中维生素B12依赖性甘油脱水酶失活的影响]
Biokhimiia. 1976;41(7):1297-1305.
6
[Coenzyme properties of adenosylcobalamin analogs with modifications in the purine nucleus of the alpha-ligand].[在α-配体嘌呤核中具有修饰的腺苷钴胺素类似物的辅酶性质]
Biokhimiia. 1982 Sep;47(9):1471-5.
7
Studies on the mechanism of the adenosylcobalamin-dependent diol dehydrase reaction by the use of analogs of the coenzyme.利用辅酶类似物对腺苷钴胺素依赖性二醇脱水酶反应机制的研究。
J Biol Chem. 1977 Feb 10;252(3):963-70.
8
[Interaction of substrates and their analogs with adenosylcobalamine-dependent glycerol dehydratase].[底物及其类似物与腺苷钴胺素依赖性甘油脱水酶的相互作用]
Biokhimiia. 1979 Mar;44(3):467-76.
9
Roles of the beta-D-ribofuranose ring and the functional groups of the D-ribose moiety of adenosylcobalamin in the diol dehydratase reaction.腺苷钴胺素的β-D-呋喃核糖环及D-核糖部分的官能团在二醇脱水酶反应中的作用。
Biochim Biophys Acta. 1988 Jan 29;952(2):191-200. doi: 10.1016/0167-4838(88)90115-x.
10
[Role of e-propione amide group of the corrine macrocycle in the manifestation of coenzyme properties of the cobamide coenzyme].[咕啉大环的e-丙酰胺基团在钴胺酰胺辅酶辅酶特性表现中的作用]
Biokhimiia. 1976 May;41(5):915-20.