Mikkonen M, Räisänen L, Alatossava T
Department of Biology, University of Oulu, Finland.
Gene. 1996 Oct 10;175(1-2):49-57. doi: 10.1016/0378-1119(96)00119-9.
Transcription of genes from phage LL-H can be divided into an early phase and a late phase. The early gene region was located in a 5.9-kb segment of the phage LL-H genome and it was part of the sequence that completed the phage LL-H genome sequence, 34 659 bp in size. Phage LL-H is the first completely sequenced Lactobacillus phage. In the main coding strand of phage LL-H genome 48 putative ORFs could be detected, but only four small putative ORFs could be found in the opposite strand. The ORFs covered 85.6% of the main coding strand. Function could be assigned to eleven of the phage LL-H ORFs either by biochemical analyses or by database homologies. A single-strand-binding protein, SSB, was detected in addition to the previously determined functions (small and large subunits of terminase, intron-encoded endonuclease, six structural proteins, phage lysin). For 15 additional ORFs of phage LL-H homology was detected in databases, but no function could be inferred for them.
噬菌体LL-H基因的转录可分为早期阶段和晚期阶段。早期基因区域位于噬菌体LL-H基因组的一个5.9 kb片段中,它是完成大小为34659 bp的噬菌体LL-H基因组序列的一部分。噬菌体LL-H是首个全序列测定的乳酸杆菌噬菌体。在噬菌体LL-H基因组的主要编码链中可检测到48个推定的开放阅读框(ORF),但在相反链中仅能找到4个小的推定ORF。这些ORF覆盖了主要编码链的85.6%。通过生化分析或数据库同源性分析,可将功能赋予噬菌体LL-H的11个ORF。除了先前确定的功能(端粒酶的小亚基和大亚基、内含子编码的内切核酸酶、六种结构蛋白、噬菌体溶菌酶)外,还检测到一种单链结合蛋白SSB。在数据库中检测到噬菌体LL-H另外15个ORF具有同源性,但无法推断它们的功能。