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从一名日本非甲-戊型肝炎患者分离出的庚型肝炎病毒基因组序列:通过长链逆转录聚合酶链反应进行扩增和克隆

Sequence of hepatitis G virus genome isolated from a Japanese patient with non-A-E-hepatitis: amplification and cloning by long reverse transcription-PCR.

作者信息

Shao L, Shinzawa H, Ishikawa K, Zhang X, Ishibashi M, Misawa H, Yamada N, Togashi H, Takahashi T

机构信息

Second Department of Internal Medicine, Yamagata University School of Medicine, Japan.

出版信息

Biochem Biophys Res Commun. 1996 Nov 21;228(3):785-91. doi: 10.1006/bbrc.1996.1732.

DOI:10.1006/bbrc.1996.1732
PMID:8941354
Abstract

The nucleotide sequence of hepatitis G virus (HGV) genome was determined by analysis of cDNA clones obtained by long reverse transcription-polymerase chain reaction (long RT PCR) and 5'- and 3'-rapid amplification of cDNA ends (RACE) from a Japanese patient (Iw) with non A-E hepatitis. The HGV-Iw genome, consisting of 9375 nucleotides, contains a long open reading frame encoding 2873 amino acid residues. Comparison of HGV-Iw with two American isolates of HGV and one African isolate of GB virus C (GBV-C) indicates that although the nucleotide sequences of these isolates were considerably divergent (86.2% to 93.3%), the deduced amino acid sequences shared an extremely high degree of identity (96.1% to 100%). It was also found that HGV-Iw was more closely related to the HGV isolates from USA than to the GBV-C isolate from Africa.

摘要

通过对一位患有非甲 - 戊型肝炎的日本患者(Iw)的长链逆转录 - 聚合酶链反应(长链RT PCR)以及5'和3' cDNA末端快速扩增(RACE)获得的cDNA克隆进行分析,确定了庚型肝炎病毒(HGV)基因组的核苷酸序列。HGV - Iw基因组由9375个核苷酸组成,包含一个编码2873个氨基酸残基的长开放阅读框。将HGV - Iw与两株美国HGV分离株以及一株非洲GB病毒C(GBV - C)分离株进行比较,结果表明,尽管这些分离株的核苷酸序列差异很大(86.2%至93.3%),但推导的氨基酸序列具有极高的同一性(96.1%至100%)。还发现HGV - Iw与来自美国的HGV分离株的关系比与来自非洲的GBV - C分离株的关系更为密切。

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