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人类染色体4p16.3的转录图谱,由来自亨廷顿舞蹈病基因座1兆碱基的627个互补DNA克隆组成。

Transcript map of the human chromosome 4p16.3 consisting of 627 cDNA clones derived from 1 Mb of the Huntington's disease locus.

作者信息

Hadano S, Ishida Y, Tomiyasu H, Yamamoto K, Bates G P, Ikeda J E

机构信息

NeuroGenes, International Research Exchange Project, Research Development Corporation of Japan (JRDC), Tokai University School of Medicine, Kanagawa, Japan.

出版信息

DNA Res. 1996 Aug 31;3(4):239-55. doi: 10.1093/dnares/3.4.239.

DOI:10.1093/dnares/3.4.239
PMID:8946164
Abstract

Six hundred and twenty-seven cDNA clones from human brain cDNA libraries were characterized and integrated into a transcript map of the 1-Mb region on human chromosome 4p16.3 containing the Huntington's disease (HD) gene. Six hundred and seventy-two cDNA clones were obtained by a direct screening of the cDNA libraries, probing with pools of single copy microclones generated from the HD region specific yeast artificial chromosome (YAC)-DNA. So far, 93% of the obtained clones (627 cDNA clones) have been mapped onto the 1-Mb HD gene region by hybridization with HD region-specific cosmid, P1 and YAC clones. DNA sequence and expression analyses revealed that several cDNA clones might encode novel genes, some of which are situated within or close to the IT15, IT11, and alpha-adducin (ADD1) gene region, suggesting the presence of the overlapping genes in this region. This collection of cDNA clones will greatly facilitate the construction of the complete map of the transcripts in the HD region.

摘要

对来自人脑cDNA文库的627个cDNA克隆进行了表征,并将其整合到人类4号染色体p16.3区域1 Mb范围内包含亨廷顿舞蹈病(HD)基因的转录图谱中。通过直接筛选cDNA文库获得了672个cDNA克隆,用从HD区域特异性酵母人工染色体(YAC)-DNA产生的单拷贝微克隆池进行探测。到目前为止,通过与HD区域特异性黏粒、P1和YAC克隆杂交,已将93%的获得克隆(627个cDNA克隆)定位到1 Mb的HD基因区域。DNA序列和表达分析表明,几个cDNA克隆可能编码新基因,其中一些位于IT15、IT11和α-内收蛋白(ADD1)基因区域内或附近,提示该区域存在重叠基因。这组cDNA克隆将极大地促进HD区域转录本完整图谱的构建。

相似文献

1
Transcript map of the human chromosome 4p16.3 consisting of 627 cDNA clones derived from 1 Mb of the Huntington's disease locus.人类染色体4p16.3的转录图谱,由来自亨廷顿舞蹈病基因座1兆碱基的627个互补DNA克隆组成。
DNA Res. 1996 Aug 31;3(4):239-55. doi: 10.1093/dnares/3.4.239.
2
Cloning and mapping of the alpha-adducin gene close to D4S95 and assessment of its relationship to Huntington disease.
Hum Mol Genet. 1992 Dec;1(9):669-75. doi: 10.1093/hmg/1.9.669.
3
The primary structure and genomic organization of five novel transcripts located close to the Huntington's disease gene on human chromosome 4p16.3.
DNA Res. 1998 Jun 30;5(3):177-86. doi: 10.1093/dnares/5.3.177.
4
Cloning of the Huntington disease region in yeast artificial chromosomes.酵母人工染色体中亨廷顿病区域的克隆
Hum Mol Genet. 1992 Jun;1(3):149-59. doi: 10.1093/hmg/1.3.149.
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Isolation and characterization of 21 novel expressed DNA sequences from the distal region of human chromosome 4p.
Genomics. 1994 Jul 15;22(2):302-12. doi: 10.1006/geno.1994.1388.
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Identification of an Alu retrotransposition event in close proximity to a strong candidate gene for Huntington's disease.在与亨廷顿舞蹈症的一个强候选基因紧密相邻处鉴定出一个Alu逆转座事件。
Nature. 1993 Mar 25;362(6418):370-3. doi: 10.1038/362370a0.
7
Characterization of a yeast artificial chromosome contig spanning the Huntington's disease gene candidate region.
Nat Genet. 1992 Jun;1(3):180-7. doi: 10.1038/ng0692-180.
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Construction of cosmid contigs and high-resolution restriction mapping of the Huntington disease region of human chromosome 4.人类4号染色体亨廷顿病区域的黏粒重叠群构建及高分辨率限制性图谱绘制。
Hum Mol Genet. 1993 Jul;2(7):889-99. doi: 10.1093/hmg/2.7.889.
9
Cloning of the alpha-adducin gene from the Huntington's disease candidate region of chromosome 4 by exon amplification.
Nat Genet. 1992 Nov;2(3):223-7. doi: 10.1038/ng1192-223.
10
A transcription map of the region containing the Huntington disease gene.包含亨廷顿舞蹈症基因区域的转录图谱。
Hum Mol Genet. 1993 Jul;2(7):901-7. doi: 10.1093/hmg/2.7.901.

引用本文的文献

1
Origin of gene overlap: the case of TCP1 and ACAT2.基因重叠的起源:TCP1和ACAT2的例子。
Genetics. 1999 Jun;152(2):743-54. doi: 10.1093/genetics/152.2.743.
2
Chromosome microdissection and microcloning.染色体显微切割与微克隆
Chromosome Res. 1997 Apr;5(2):77-80. doi: 10.1023/a:1018453721934.