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独特型网络相互作用经验矩阵的逆分析

Inverse analysis of empirical matrices of idiotypic network interactions.

作者信息

B-Rao C, Stewart J

机构信息

Centre for Cellular and Molecular Biology, Hyderabad, India.

出版信息

Bull Math Biol. 1996 Nov;58(6):1123-53. doi: 10.1007/BF02458386.

DOI:10.1007/BF02458386
PMID:8953259
Abstract

The concept of shape space proposed by Perelson and Oster (1979, J. Theor. Biol. 81, 645-670) has been a useful tool for the theoretical immunologists, who have invoked it to model idiotypic binding, which plays a significant role in mathematical models of immune networks. The actual construction of such a space from its definition requires specialized experimental information, which is not completely available. In this article, we discuss, with illustrative examples, how graphical representations similar to the idea of shape space can be derived by analyzing real affinity matrices, and the relative merits of such representations to approximations that might be obtained by the approach of Perelson and Oster. We also give directions for future research with a view toward applications.

摘要

佩雷尔森和奥斯特(1979年,《理论生物学杂志》81卷,645 - 670页)提出的形状空间概念,已成为理论免疫学家的有用工具,他们用它来模拟独特型结合,独特型结合在免疫网络的数学模型中起着重要作用。从其定义实际构建这样一个空间需要专门的实验信息,而这些信息并不完全可得。在本文中,我们通过示例讨论如何通过分析实际亲和力矩阵得出类似于形状空间概念的图形表示,以及这种表示相对于佩雷尔森和奥斯特方法可能得到的近似值的相对优点。我们还给出了面向应用的未来研究方向。

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1
Inverse analysis of empirical matrices of idiotypic network interactions.独特型网络相互作用经验矩阵的逆分析
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2
Immune network theory.免疫网络理论。
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本文引用的文献

1
Rethinking "shape space": evidence from simulated docking suggests that steric shape complementarity is not limiting for antibody-antigen recognition and idiotypic interactions.重新审视“形状空间”:来自模拟对接的证据表明,空间形状互补性并非抗体-抗原识别和独特型相互作用的限制因素。
J Theor Biol. 1994 Aug 21;169(4):391-402. doi: 10.1006/jtbi.1994.1161.
2
Central immune system, the self and autoimmunity.中枢免疫系统、自我与自身免疫
Bull Math Biol. 1994 Nov;56(6):1009-40. doi: 10.1007/BF02460286.
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Positive and negative selection of antibody repertoires during B-cell differentiation.
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Immunol Rev. 1989 Aug;110:37-61. doi: 10.1111/j.1600-065x.1989.tb00026.x.
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Somatic mutation, affinity maturation and the antibody repertoire: a computer model.体细胞突变、亲和力成熟与抗体库:一个计算机模型
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Pattern formation in one- and two-dimensional shape-space models of the immune system.免疫系统一维和二维形状空间模型中的模式形成。
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Theoretical studies of clonal selection: minimal antibody repertoire size and reliability of self-non-self discrimination.克隆选择的理论研究:最小抗体库大小与自我-非自我识别的可靠性
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