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定向随机寡核苷酸引物介导的(DROP)cDNA全基因组扩增:其在消减cDNA克隆中的应用

Directional random oligonucleotide primed (DROP) global amplification of cDNA: its application to subtractive cDNA cloning.

作者信息

Hampson I N, Hampson L, Dexter T M

机构信息

Department of Experimental Haematology, Paterson Institute of Cancer Research, Christie Hospital, Manchester, UK.

出版信息

Nucleic Acids Res. 1996 Dec 1;24(23):4832-5. doi: 10.1093/nar/24.23.4832.

DOI:10.1093/nar/24.23.4832
PMID:8972873
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC146298/
Abstract

We describe a method of global PCR amplification of cDNA such that the strand sense is maintained. The products of this process are random primed fragments ranging in size from 100 to 500 bp which facilitates uniform PCR amplification of total cDNA. Directional incorporation of a T7 RNA polymerase initiator/promoter sequence allows efficient synthesis of total sense RNA from this material and the use of a biotinylated primer permits the separation of single-stranded cDNA. Isolation of these products from different cell types provides a renewable source of target single-stranded cDNA and driver RNA from limited cell numbers and we demonstrate their use for subtractive hybridisation cloning of differentially expressed cDNAs.

摘要

我们描述了一种对cDNA进行全基因组PCR扩增并保持链方向的方法。该过程的产物是大小在100至500 bp之间的随机引物片段,这有助于对总cDNA进行均匀的PCR扩增。T7 RNA聚合酶起始子/启动子序列的定向掺入允许从该材料高效合成有义总RNA,并且使用生物素化引物可实现单链cDNA的分离。从不同细胞类型中分离这些产物可从有限数量的细胞中提供可再生的靶单链cDNA和驱动RNA来源,并且我们展示了它们在差异表达cDNA的消减杂交克隆中的应用。

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Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.抑制性消减杂交:一种用于生成差异调控或组织特异性cDNA探针及文库的方法。
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WAF1, a potential mediator of p53 tumor suppression.WAF1,一种p53肿瘤抑制的潜在介导因子。
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Genomic subtraction for cloning DNA corresponding to deletion mutations.用于克隆与缺失突变相对应的DNA的基因组消减技术。
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Application for PCR technology to subtractive cDNA cloning: identification of genes expressed specifically in murine plasmacytoma cells.聚合酶链反应技术在消减cDNA克隆中的应用:鉴定在小鼠浆细胞瘤细胞中特异性表达的基因
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10
Improved efficiency for single-sided PCR by creating a reusable pool of first-strand cDNA coupled to a solid phase.通过创建与固相偶联的可重复使用的第一链cDNA库提高单链PCR效率。
Nucleic Acids Res. 1991 Jul 25;19(14):4010. doi: 10.1093/nar/19.14.4010.