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布氏锥虫利用人类和真菌的3'剪接位点进行反式剪接。

Human and fungal 3' splice sites are used by Trypanosoma brucei for trans splicing.

作者信息

Metzenberg S, Agabian N

机构信息

Intercampus Program in Molecular Parasitology, University of California-San Francisco 94143-1204, USA.

出版信息

Mol Biochem Parasitol. 1996 Dec 2;83(1):11-23. doi: 10.1016/s0166-6851(96)02742-9.

DOI:10.1016/s0166-6851(96)02742-9
PMID:9010838
Abstract

In Trypanosoma brucei, pre-mRNAs are joined to a 5' 39 nt spliced leader sequence by trans splicing, a process that has not been well characterized. We have asked whether the 3' splice site regions of human and yeast introns are able to substitute in vivo for the 3' spliced leader acceptor regions of trypanosome pre-mRNA sequences. The ability of heterologous sequences to participate in trans splicing in trypanosomes was assayed by chloramphenicol acetyltransferase (CAT) enzyme activity and/or the detection of spliced CAT mRNA. Four out of the six heterologous 3' splice site regions (human beta-globin intervening sequence (IVS)2, human c-myc IVS2, human factor-VIII IVS1, and yeast actin IVS) functioned as 3' spliced leader acceptor regions in T. brucei, while two did not show significant or detectable levels of CAT activity (human beta-globin IVS1 and human c-myc IVS1). In the case of the human beta-globin IVS1 however, lengthening of the polypyrimidine tract as a result of single purine to pyrimidine transversions produced an active acceptor in which the spliced leader addition site coincides with the 3' splice site of the beta-globin exon 2. These studies indicate that some, but not all 3' acceptor regions in humans can function as spliced leader addition sites in trypansomes.

摘要

在布氏锥虫中,前体mRNA通过反式剪接与一个5'端39个核苷酸的剪接前导序列相连,这一过程尚未得到充分表征。我们探究了人类和酵母内含子的3'剪接位点区域是否能够在体内替代锥虫前体mRNA序列的3'剪接前导序列受体区域。通过氯霉素乙酰转移酶(CAT)酶活性和/或检测剪接后的CAT mRNA,来测定异源序列参与锥虫反式剪接的能力。六个异源3'剪接位点区域中的四个(人类β-珠蛋白内含子序列(IVS)2、人类c-myc IVS2、人类因子VIII IVS1和酵母肌动蛋白IVS)在布氏锥虫中发挥了3'剪接前导序列受体区域的功能,而另外两个(人类β-珠蛋白IVS1和人类c-myc IVS1)未显示出显著或可检测到的CAT活性水平。然而,就人类β-珠蛋白IVS1而言,由于单个嘌呤到嘧啶的颠换导致多嘧啶序列延长,产生了一个活性受体,其中剪接前导序列添加位点与β-珠蛋白外显子2的3'剪接位点重合。这些研究表明,人类中的一些但并非所有3'受体区域都可以在锥虫中作为剪接前导序列添加位点发挥作用。

相似文献

1
Human and fungal 3' splice sites are used by Trypanosoma brucei for trans splicing.布氏锥虫利用人类和真菌的3'剪接位点进行反式剪接。
Mol Biochem Parasitol. 1996 Dec 2;83(1):11-23. doi: 10.1016/s0166-6851(96)02742-9.
2
A new twist in trypanosome RNA metabolism: cis-splicing of pre-mRNA.锥虫RNA代谢的新变化:前体mRNA的顺式剪接
RNA. 2000 Feb;6(2):163-9. doi: 10.1017/s135583820099229x.
3
Identification of a small RNA that interacts with the 5' splice site of the Trypanosoma brucei spliced leader RNA in vivo.在体内鉴定一种与布氏锥虫剪接前导RNA的5'剪接位点相互作用的小RNA。
Cell. 1994 Jan 14;76(1):171-82. doi: 10.1016/0092-8674(94)90181-3.
4
Differential response to RNA trans-splicing signals within the phosphoglycerate kinase gene cluster in Trypanosoma brucei.布氏锥虫磷酸甘油酸激酶基因簇内对RNA反式剪接信号的差异反应
Nucleic Acids Res. 1993 Aug 25;21(17):4067-72. doi: 10.1093/nar/21.17.4067.
5
A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes.一个常见的富含嘧啶的基序调控锥虫中微管蛋白多顺反子前体mRNA的反式剪接和聚腺苷酸化。
Genes Dev. 1994 Feb 15;8(4):491-501. doi: 10.1101/gad.8.4.491.
6
Mapping of branch sites in trans-spliced pre-mRNAs of Trypanosoma brucei.布氏锥虫反式剪接前体mRNA中分支位点的定位
Mol Cell Biol. 1989 Oct;9(10):4291-7. doi: 10.1128/mcb.9.10.4291-4297.1989.
7
Messenger RNA processing sites in Trypanosoma brucei.布氏锥虫中的信使核糖核酸加工位点
Mol Biochem Parasitol. 2005 Oct;143(2):125-34. doi: 10.1016/j.molbiopara.2005.05.008.
8
Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts.锥虫中RNA加工反应的时间顺序:快速反式剪接先于新合成的微管蛋白转录本的聚腺苷酸化。
Mol Cell Biol. 1993 Jan;13(1):720-5. doi: 10.1128/mcb.13.1.720-725.1993.
9
The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity.来自布氏锥虫的TbMTr1剪接前导RNA帽1 2'-O-核糖甲基转移酶具有底物特异性。
J Biol Chem. 2008 Feb 8;283(6):3161-3172. doi: 10.1074/jbc.M707367200. Epub 2007 Nov 29.
10
Characterization of a SR protein from Trypanosoma brucei with homology to RNA-binding cis-splicing proteins.来自布氏锥虫的一种与RNA结合顺式剪接蛋白具有同源性的SR蛋白的特性分析。
Mol Biochem Parasitol. 1999 Jul 30;102(1):103-15. doi: 10.1016/s0166-6851(99)00091-2.

引用本文的文献

1
Systematic study of sequence motifs for RNA trans splicing in Trypanosoma brucei.布氏锥虫RNA反式剪接序列基序的系统研究。
Mol Cell Biol. 2005 Nov;25(21):9586-94. doi: 10.1128/MCB.25.21.9586-9594.2005.
2
An organism-specific method to rank predicted coding regions in Trypanosoma brucei.一种用于对布氏锥虫中预测的编码区域进行排名的物种特异性方法。
Nucleic Acids Res. 2003 Oct 15;31(20):5877-85. doi: 10.1093/nar/gkg798.
3
The two RNA ligases of the Trypanosoma brucei RNA editing complex: cloning the essential band IV gene and identifying the band V gene.
布氏锥虫RNA编辑复合体的两种RNA连接酶:克隆必需的条带IV基因并鉴定条带V基因。
Mol Cell Biol. 2001 Feb;21(4):979-89. doi: 10.1128/MCB.21.4.979-989.2001.