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基因组序列数据库1.0版(GSDB):从低通量序列到完整基因组

The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.

作者信息

Harger C, Skupski M, Allen E, Clark C, Crowley D, Dickinson E, Easley D, Espinosa-Lujan A, Farmer A, Fields C, Flores L, Harris L, Keen G, Manning M, McLeod M, O'Neill J, Pumilia M, Reinert R, Rider D, Rohrlich J, Romero Y, Schwertfeger J, Seluja G, Siepel A, Schad P A

机构信息

National Center for Genome Resources, 1800A Old Pecos Trail, Santa Fe, NM 87505, USA.

出版信息

Nucleic Acids Res. 1997 Jan 1;25(1):18-23. doi: 10.1093/nar/25.1.18.

Abstract

The Genome Sequence DataBase (GSDB) has completed its conversion to an improved relational database. The new database, GSDB 1.0, is fully operational and publicly available. Data contributions, including both original sequence submissions and community annotation, are being accomplished through the use of a graphical client-server interface tool, the GSDB Annotator, and via GIO (GSDB Input/Output) files. Data retrieval services are being provided through a new Web Query Tool and direct SQL. All methods of data contribution and data retrieval fully support the new data types that have been incorporated into GSDB, including discontiguous sequences, multiple sequence alignments, and community annotation.

摘要

基因组序列数据库(GSDB)已完成向改进型关系数据库的转换。新数据库GSDB 1.0已全面投入使用并可公开获取。数据贡献,包括原始序列提交和社区注释,通过使用图形化客户端 - 服务器界面工具GSDB注释器以及通过GIO(GSDB输入/输出)文件来完成。数据检索服务通过新的网络查询工具和直接SQL提供。所有数据贡献和数据检索方法都完全支持已纳入GSDB的新数据类型,包括不连续序列、多序列比对和社区注释。

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