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将牛遗传图谱与物理图谱锚定的黏粒衍生标记。

Cosmid-derived markers anchoring the bovine genetic map to the physical map.

作者信息

Ferretti L, Urquhart B G, Eggen A, Olsaker I, Harlizius B, Castiglioni B, Mezzelani A, Solinas Toldo S, Thieven U, Zhang Y, Morgan A L, Teres V M, Schwerin M, Martin-Burriel I, Chowdhary B P, Erhardt G, Nijman I J, Cribiu E P, Barendse W, Leveziel H, Fries R, Williams J L

机构信息

IDVGA-CNR, Milan, Italy.

出版信息

Mamm Genome. 1997 Jan;8(1):29-36. doi: 10.1007/s003359900341.

DOI:10.1007/s003359900341
PMID:9021144
Abstract

The mapping strategy for the bovine genome described in this paper uses large insert clones as a tool for physical mapping and as a source of highly polymorphic microsatellites for genetic typing, and was one objective of the BovMap Project funded by the European Union (UE). Eight-three cosmid and phage clones were characterized and used to physically anchor the linkage groups defining all the bovine autosomes and the X Chromosome (Chr). By combining physical and genetic mapping, clones described in this paper have led to the identification of the linkage groups corresponding to Chr 9, 12, 16, and 25. In addition, anchored loci from this study were used to orient the linkage groups corresponding to Chr 3, 7, 8, 9, 13, 16, 18, 19, and 28 as identified in previously published maps. Comparison of the estimated size of the physical and linkage maps suggests that the genetic length of the bovine genome may be around 4000 cM.

摘要

本文所述的牛基因组图谱构建策略,使用大插入片段克隆作为物理图谱构建的工具以及用于基因分型的高度多态微卫星的来源,这是由欧盟资助的BovMap项目的一个目标。对83个黏粒和噬菌体克隆进行了表征,并用于物理定位定义所有牛常染色体和X染色体(Chr)的连锁群。通过结合物理图谱和遗传图谱,本文所述的克隆已导致鉴定出与Chr 9、12、16和25相对应的连锁群。此外,本研究中定位的位点被用于确定先前发表的图谱中与Chr 3、7、8、9、13、16、18、19和28相对应的连锁群的方向。物理图谱和连锁图谱估计大小的比较表明,牛基因组的遗传长度可能约为4000 cM。

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International system for cytogenetic nomenclature of domestic animals. The Second International Conference on Standardization of Domestic Animal Karyotypes, INRA, Jouy-en Josas, France, 22nd-26th May, 1989.家畜细胞遗传学命名国际系统。第二届家畜核型标准化国际会议,法国国家农业研究院,若伊昂若萨,1989年5月22日至26日
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Physical and genetic mapping of a bovine dinucleotide repeat marker D23S38 (IOBT1479) to chromosome 23q24-q25.
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Using SSCP to facilitate mapping microsatellite loci.
Mamm Genome. 1997 Jan;8(1):79-80. doi: 10.1007/s003359900635.
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大鼠基因图谱与细胞遗传图谱之间的相关性。
Mamm Genome. 1998 Apr;9(4):287-93. doi: 10.1007/s003359900750.
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A second-generation linkage map of the sheep genome.绵羊基因组的第二代连锁图谱。
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Six bovine cosmid-derived microsatellites mapping different syntenic groups are fluorescence in situ hybridization mapped to six river buffalo chromosomes.六个定位在不同同线群上的牛黏粒衍生微卫星通过荧光原位杂交定位到六个河水牛染色体上。
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New markers on bovine chromosome 1 are closely linked to the polled gene in Simmental and Pinzgauer cattle.牛1号染色体上的新标记与西门塔尔牛和皮茨高尔牛的无角基因紧密连锁。
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Mapping two bovine marker loci, IDVGA66 (D16S34) and IDVGA76 (D14S35) by SSCP.通过单链构象多态性(SSCP)对两个牛标记基因座IDVGA66(D16S34)和IDVGA76(D14S35)进行定位。
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5
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A medium-density genetic linkage map of the bovine genome.牛基因组的中等密度遗传连锁图谱。
Mamm Genome. 1997 Jan;8(1):21-8. doi: 10.1007/s003359900340.
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Standardization of cattle karyotype nomenclature: report of the committee for the standardization of the cattle karyotype.牛染色体核型命名的标准化:牛染色体核型标准化委员会的报告
Cytogenet Cell Genet. 1996;74(4):259-61. doi: 10.1159/000134429.
8
Ten new cosmid-derived bovine microsatellite markers.
Anim Genet. 1996 Oct;27(5):380. doi: 10.1111/j.1365-2052.1996.tb00995.x.
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IDVGA65 (D6S29), a SSCP marker assigned to BTA6 by means of FISH, genetic and synteny mapping.
Anim Genet. 1996 Oct;27(5):379. doi: 10.1111/j.1365-2052.1996.tb00994.x.
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A polymorphic bovine dinucleotide repeat D17S29 (IOZARA 975) at chromosome 17q26.
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