• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于基于傅里叶变换的蛋白质分析的氨基酸参数选择

Selection of amino acid parameters for Fourier transform-based analysis of proteins.

作者信息

Lazović J

机构信息

Laboratory for Multidisciplinary Research 180/2, Institute of Nuclear Sciences Vinća, Belgrade, Yugoslavia.

出版信息

Comput Appl Biosci. 1996 Dec;12(6):553-62. doi: 10.1093/bioinformatics/12.6.553.

DOI:10.1093/bioinformatics/12.6.553
PMID:9021277
Abstract

Fourier analysis of the parametric profile of a sequence for the detection and localization of the structural motifs that are characteristic for biologically related proteins has been proposed. In order to select parameters that are most appropriate for this analysis, the informational capacity of 226 physicochemical, thermodynamic, structural and statistical amino acid parameters was analyzed. Based on the results, obtained for the four functionally unrelated protein model groups (lysozyme c, HIV-1 gp120, tubulin and tau proteins, and steroid hormone receptors), the electron-ion interaction potential has been selected as the unique amino acid property that can be used in Fourier transform-based analysis of proteins, independently of their biological function.

摘要

有人提出对序列的参数轮廓进行傅里叶分析,以检测和定位与生物相关蛋白质特征性的结构基序。为了选择最适合该分析的参数,分析了226个物理化学、热力学、结构和统计氨基酸参数的信息容量。基于对四个功能不相关的蛋白质模型组(溶菌酶c、HIV-1 gp120、微管蛋白和tau蛋白以及类固醇激素受体)获得的结果,电子-离子相互作用势已被选为可用于基于傅里叶变换的蛋白质分析的独特氨基酸特性,而与它们的生物学功能无关。

相似文献

1
Selection of amino acid parameters for Fourier transform-based analysis of proteins.用于基于傅里叶变换的蛋白质分析的氨基酸参数选择
Comput Appl Biosci. 1996 Dec;12(6):553-62. doi: 10.1093/bioinformatics/12.6.553.
2
The Fourier-Green's function and the rapid evaluation of molecular potentials.傅里叶-格林函数与分子势能的快速评估
Protein Eng. 1994 Mar;7(3):359-69. doi: 10.1093/protein/7.3.359.
3
Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.结合序列、结构、进化和氨基酸特性信息得出的蛋白质元功能特征。
PLoS Comput Biol. 2008 Sep 26;4(9):e1000181. doi: 10.1371/journal.pcbi.1000181.
4
Solution structure of acyl carrier protein from Nitrosomonas europaea.欧洲亚硝化单胞菌酰基载体蛋白的溶液结构
Proteins. 2006 Aug 15;64(3):800-3. doi: 10.1002/prot.21016.
5
Preliminary expansion of the resonant recognition model to incorporate multi variable analysis.
Australas Phys Eng Sci Med. 1995 Dec;18(4):197-207.
6
A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.一种具有独立位点的蛋白质进化模型,可从蛋白质数据库中重现位点特异性氨基酸分布。
BMC Evol Biol. 2006 May 31;6:43. doi: 10.1186/1471-2148-6-43.
7
Classification of amino acids based on statistical results of known structures and cooperativity of protein folding.基于已知结构的统计结果和蛋白质折叠协同性对氨基酸进行分类。
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jun;65(6 Pt 1):061907. doi: 10.1103/PhysRevE.65.061907. Epub 2002 Jun 20.
8
The protein folding problem.蛋白质折叠问题。
Sci Am. 1991 Jan;264(1):54-7, 60-3. doi: 10.1038/scientificamerican0191-54.
9
A novel graphical representation of protein sequences and its application.一种新颖的蛋白质序列图形表示及其应用。
J Comput Chem. 2011 Sep;32(12):2539-44. doi: 10.1002/jcc.21833. Epub 2011 Jun 2.
10
Staden: statistical and structural analysis of protein sequences.斯塔登:蛋白质序列的统计与结构分析
Methods Mol Biol. 1994;25:125-30. doi: 10.1385/0-89603-276-0:125.

引用本文的文献

1
Common molecular mechanism of the hepatic lesion and the cardiac parasympathetic regulation in chronic hepatitis C infection: a critical role for the muscarinic receptor type 3.慢性丙型肝炎感染中肝脏病变与心脏副交感神经调节的共同分子机制:M3型毒蕈碱受体的关键作用
BMC Bioinformatics. 2016 Mar 22;17:139. doi: 10.1186/s12859-016-0988-7.
2
In silico analysis suggests interaction between Ebola virus and the extracellular matrix.计算机模拟分析表明埃博拉病毒与细胞外基质之间存在相互作用。
Front Microbiol. 2015 Feb 19;6:135. doi: 10.3389/fmicb.2015.00135. eCollection 2015.
3
Assessment of hepatitis C virus protein sequences with regard to interferon/ribavirin combination therapy response in patients with HCV genotype 1b.
评估 1b 型丙型肝炎病毒患者对干扰素/利巴韦林联合治疗反应的病毒蛋白序列。
Protein J. 2012 Feb;31(2):129-36. doi: 10.1007/s10930-011-9381-6.
4
Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control.H5N1型禽流感病毒与人流感病毒血凝素保守特性的表征:对治疗和感染控制的可能影响
BMC Struct Biol. 2009 Apr 7;9:21. doi: 10.1186/1472-6807-9-21.
5
Designing human m1 muscarinic receptor-targeted hydrophobic eigenmode matched peptides as functional modulators.设计靶向人M1毒蕈碱受体的疏水本征模匹配肽作为功能调节剂。
Biophys J. 2004 Mar;86(3):1308-31. doi: 10.1016/S0006-3495(04)74204-6.