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μ阿片受体中的配体识别:基于实验的μ阿片受体结合位点建模及其通过配体对接进行的测试

Ligand recognition in mu opioid receptor: experimentally based modeling of mu opioid receptor binding sites and their testing by ligand docking.

作者信息

Sagara T, Egashira H, Okamura M, Fujii I, Shimohigashi Y, Kanematsu K

机构信息

Institute of Synthetic Organic Chemistry, Faculty of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.

出版信息

Bioorg Med Chem. 1996 Dec;4(12):2151-66. doi: 10.1016/s0968-0896(96)00219-2.

DOI:10.1016/s0968-0896(96)00219-2
PMID:9022978
Abstract

For three-dimensional understanding of the mechanisms that control potency and selectivity of the ligand binding at the atomic level, we have analysed opioid receptor-ligand interaction based on the receptor's 3D model. As a first step, we have constructed molecular models for the multiple opioid receptor subtypes using bacteriorhodopsin as a template. The S-activated dihydromorphine derivatives should serve as powerful tools in mapping the three-dimensional structure of the mu opioid receptor, including the nature of the agonist-mediated conformational change that permits G protein-coupling to "second messenger' effector molecules, and in identifying specific ligand-binding contacts with the mu opioid receptor. The analyses of the interactions of some opioid ligands with the predicted ligand binding sites are consistent with the results of the affinity labeling experiments.

摘要

为了从原子水平三维理解控制配体结合效力和选择性的机制,我们基于受体的三维模型分析了阿片受体 - 配体相互作用。第一步,我们以细菌视紫红质为模板构建了多种阿片受体亚型的分子模型。S - 活化二氢吗啡衍生物应可作为强大工具,用于绘制μ阿片受体的三维结构,包括激动剂介导的构象变化的性质,这种变化允许G蛋白与“第二信使”效应分子偶联,以及用于识别与μ阿片受体的特定配体结合接触点。一些阿片类配体与预测的配体结合位点相互作用的分析结果与亲和标记实验的结果一致。

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Ligand recognition in mu opioid receptor: experimentally based modeling of mu opioid receptor binding sites and their testing by ligand docking.μ阿片受体中的配体识别:基于实验的μ阿片受体结合位点建模及其通过配体对接进行的测试
Bioorg Med Chem. 1996 Dec;4(12):2151-66. doi: 10.1016/s0968-0896(96)00219-2.
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[Ligand recognition in the opioid receptors by modeling methods and the design of opioids].[通过建模方法对阿片受体中的配体识别及阿片类药物的设计]
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Molecular docking reveals a novel binding site model for fentanyl at the mu-opioid receptor.分子对接揭示了芬太尼在μ-阿片受体上的一种新型结合位点模型。
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Molecular modeling of mu opioid receptor and receptor-ligand interaction.μ阿片受体及其受体-配体相互作用的分子模拟
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Molecular modeling of mu opioid receptor and its interaction with ohmefentanyl.μ阿片受体的分子建模及其与奥芬太尼的相互作用。
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Complex of an active mu-opioid receptor with a cyclic peptide agonist modeled from experimental constraints.基于实验限制构建的活性μ阿片受体与环肽激动剂的复合物。
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引用本文的文献

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Morphine-induced trafficking of a mu-opioid receptor interacting protein in rat locus coeruleus neurons.吗啡诱导大鼠蓝斑核神经元中一种μ-阿片受体相互作用蛋白的转运
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Synthesis, binding affinity, and functional in vitro activity of 3-benzylaminomorphinan and 3-benzylaminomorphine ligands at opioid receptors.3-苄基氨基吗啡烷和 3-苄基氨基吗啡类配体在阿片受体上的合成、结合亲和力和体外功能活性。
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Consensus 3D model of μ-opioid receptor ligand efficacy based on a quantitative Conformationally Sampled Pharmacophore.
基于定量构象采样药效团的 μ 阿片受体配体效力共识 3D 模型。
J Phys Chem B. 2011 Jun 9;115(22):7487-96. doi: 10.1021/jp202542g. Epub 2011 May 12.
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Insights into subtype selectivity of opioid agonists by ligand-based and structure-based methods.基于配体和结构的方法深入了解阿片类激动剂的亚型选择性。
J Mol Model. 2011 Mar;17(3):477-93. doi: 10.1007/s00894-010-0745-1. Epub 2010 May 25.
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Homology modeling of opioid receptor-ligand complexes using experimental constraints.利用实验约束条件对阿片受体-配体复合物进行同源建模。
AAPS J. 2005 Oct 5;7(2):E434-48. doi: 10.1208/aapsj070243.