• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

非洲爪蟾RNA聚合酶I转录因子UBF在转录增强中发挥的作用与在启动子处的作用不同。

The Xenopus RNA polymerase I transcription factor, UBF, has a role in transcriptional enhancement distinct from that at the promoter.

作者信息

McStay B, Sullivan G J, Cairns C

机构信息

Biomedical Research Centre, University of Dundee, UK.

出版信息

EMBO J. 1997 Jan 15;16(2):396-405. doi: 10.1093/emboj/16.2.396.

DOI:10.1093/emboj/16.2.396
PMID:9029158
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1169644/
Abstract

Repeated sequence elements found upstream of the ribosomal gene promoter in Xenopus function as RNA polymerase I-specific transcriptional enhancers. Here we describe an in vitro system in which these enhancers function in many respects as in vivo. The principal requirement for enhancer function in vitro is the presence of a high concentration of upstream binding factor (UBF). This system is utilized to demonstrate that enhancers function by increasing the probability of a stable transcription complex forming on the adjacent promoter. Species differences in UBF are utilized to demonstrate that enhancers do not act by recruiting UBF to the promoter, rather UBF performs its own distinct role at the enhancers. UBF function in enhancement differs from that at the promoter, as it is flexible with respect to both the species of UBF and the enhancer element employed. Additionally, we identify a potential role for the mammalian UBF splice variant, UBF2, in enhancer function. We demonstrate that the TATA box binding protein (TBP)-containing component of Xenopus RNA polymerase I transcription, Rib1, can interact with an enhancer-UBF complex. This suggests a model in which enhancers act by recruiting Rib1 to the promoter.

摘要

在非洲爪蟾核糖体基因启动子上游发现的重复序列元件可作为RNA聚合酶I特异性转录增强子发挥作用。在此,我们描述了一种体外系统,在该系统中这些增强子在许多方面的功能与在体内时相同。体外增强子功能的主要要求是存在高浓度的上游结合因子(UBF)。利用该系统可证明增强子通过增加在相邻启动子上形成稳定转录复合物的概率来发挥作用。利用UBF中的物种差异可证明增强子并非通过将UBF招募至启动子来发挥作用,而是UBF在增强子处发挥其独特的作用。UBF在增强作用中的功能与在启动子处不同,因为它在所用的UBF物种和增强子元件方面都具有灵活性。此外,我们确定了哺乳动物UBF剪接变体UBF2在增强子功能中的潜在作用。我们证明,非洲爪蟾RNA聚合酶I转录中含TATA盒结合蛋白(TBP)的成分Rib1可与增强子-UBF复合物相互作用。这提示了一种模型,即增强子通过将Rib1招募至启动子来发挥作用。

相似文献

1
The Xenopus RNA polymerase I transcription factor, UBF, has a role in transcriptional enhancement distinct from that at the promoter.非洲爪蟾RNA聚合酶I转录因子UBF在转录增强中发挥的作用与在启动子处的作用不同。
EMBO J. 1997 Jan 15;16(2):396-405. doi: 10.1093/emboj/16.2.396.
2
Dimerization and HMG box domains 1-3 present in Xenopus UBF are sufficient for its role in transcriptional enhancement.非洲爪蟾UBF中存在的二聚化结构域和HMG盒结构域1 - 3足以使其发挥转录增强作用。
Nucleic Acids Res. 1998 Aug 1;26(15):3555-61. doi: 10.1093/nar/26.15.3555.
3
Cooperative binding of the Xenopus RNA polymerase I transcription factor xUBF to repetitive ribosomal gene enhancers.非洲爪蟾RNA聚合酶I转录因子xUBF与核糖体基因重复增强子的协同结合。
Mol Cell Biol. 1992 Nov;12(11):4970-80. doi: 10.1128/mcb.12.11.4970-4980.1992.
4
HMG box 4 is the principal determinant of species specificity in the RNA polymerase I transcription factor UBF.HMG框4是RNA聚合酶I转录因子UBF中物种特异性的主要决定因素。
Nucleic Acids Res. 1995 Nov 25;23(22):4583-90. doi: 10.1093/nar/23.22.4583.
5
Transcription from the rat 45S ribosomal DNA promoter does not require the factor UBF.大鼠45S核糖体DNA启动子的转录不需要上游结合因子(UBF)。
Gene Expr. 1993;3(3):229-36.
6
DNA looping in the RNA polymerase I enhancesome is the result of non-cooperative in-phase bending by two UBF molecules.RNA聚合酶I增强体中的DNA环化是两个UBF分子非协同同相弯曲的结果。
Nucleic Acids Res. 2001 Aug 1;29(15):3241-7. doi: 10.1093/nar/29.15.3241.
7
Upstream binding factor stabilizes Rib 1, the TATA-binding-protein-containing Xenopus laevis RNA polymerase I transcription factor, by multiple protein interactions in a DNA-independent manner.上游结合因子通过多种蛋白质相互作用以不依赖DNA的方式稳定Rib 1,即含有TATA结合蛋白的非洲爪蟾RNA聚合酶I转录因子。
Mol Cell Biol. 1996 Oct;16(10):5572-8. doi: 10.1128/MCB.16.10.5572.
8
Recruitment of TATA-binding protein-TAFI complex SL1 to the human ribosomal DNA promoter is mediated by the carboxy-terminal activation domain of upstream binding factor (UBF) and is regulated by UBF phosphorylation.TATA结合蛋白-TAFI复合物SL1募集至人核糖体DNA启动子是由上游结合因子(UBF)的羧基末端激活结构域介导的,并受UBF磷酸化调控。
Mol Cell Biol. 1999 Apr;19(4):2872-9. doi: 10.1128/MCB.19.4.2872.
9
The RNA polymerase I transcription factor UBF is a sequence-tolerant HMG-box protein that can recognize structured nucleic acids.RNA聚合酶I转录因子UBF是一种序列耐受性HMG盒蛋白,能够识别结构化核酸。
Nucleic Acids Res. 1994 Jul 11;22(13):2651-7. doi: 10.1093/nar/22.13.2651.
10
ERK modulates DNA bending and enhancesome structure by phosphorylating HMG1-boxes 1 and 2 of the RNA polymerase I transcription factor UBF.细胞外信号调节激酶(ERK)通过磷酸化RNA聚合酶I转录因子上游结合因子(UBF)的HMG1-boxes 1和2来调节DNA弯曲和增强子结构。
Biochemistry. 2006 Mar 21;45(11):3626-34. doi: 10.1021/bi051782h.

引用本文的文献

1
Nucleolar organizer regions: genomic 'dark matter' requiring illumination.核仁组织区:需要阐明的基因组“暗物质”。
Genes Dev. 2016 Jul 15;30(14):1598-610. doi: 10.1101/gad.283838.116.
2
Construction of synthetic nucleoli and what it tells us about propagation of sub-nuclear domains through cell division.合成核仁的构建及其揭示的亚核结构域在细胞分裂中的传递情况。
Cell Cycle. 2014;13(16):2501-8. doi: 10.4161/15384101.2014.949124.
3
Transcription and tyranny in the nucleolus: the organization, activation, dominance and repression of ribosomal RNA genes.核仁中的转录与调控:核糖体RNA基因的组织、激活、主导与抑制
Arabidopsis Book. 2002;1:e0083. doi: 10.1199/tab.0083. Epub 2002 Aug 12.
4
Involvement of SIRT7 in resumption of rDNA transcription at the exit from mitosis.SIRT7在有丝分裂退出时rDNA转录恢复中的作用。
J Cell Sci. 2009 Feb 15;122(Pt 4):489-98. doi: 10.1242/jcs.042382. Epub 2009 Jan 27.
5
RNA-polymerase-I-directed rDNA transcription, life and works.RNA聚合酶I指导的核糖体DNA转录、生命与工作。
Trends Biochem Sci. 2005 Feb;30(2):87-96. doi: 10.1016/j.tibs.2004.12.008.
6
UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase I transcription machinery.UBF结合位点阵列形成假核仁组织区并隔离RNA聚合酶I转录机制。
Genes Dev. 2005 Jan 1;19(1):50-64. doi: 10.1101/gad.310705. Epub 2004 Dec 14.
7
UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat.UBF在体内的结合并不局限于脊椎动物核糖体DNA重复序列中的调控序列。
Mol Cell Biol. 2002 Jan;22(2):657-68. doi: 10.1128/MCB.22.2.657-668.2002.
8
Survey and summary: transcription by RNA polymerases I and III.综述与总结:RNA聚合酶I和III介导的转录
Nucleic Acids Res. 2000 Mar 15;28(6):1283-98. doi: 10.1093/nar/28.6.1283.
9
Dimerization and HMG box domains 1-3 present in Xenopus UBF are sufficient for its role in transcriptional enhancement.非洲爪蟾UBF中存在的二聚化结构域和HMG盒结构域1 - 3足以使其发挥转录增强作用。
Nucleic Acids Res. 1998 Aug 1;26(15):3555-61. doi: 10.1093/nar/26.15.3555.
10
Nucleosome binding by the polymerase I transactivator upstream binding factor displaces linker histone H1.聚合酶I反式激活因子上游结合因子与核小体的结合会取代连接组蛋白H1。
Mol Cell Biol. 1997 Oct;17(10):5833-42. doi: 10.1128/MCB.17.10.5833.

本文引用的文献

1
The DNA supercoiling architecture induced by the transcription factor xUBF requires three of its five HMG-boxes.转录因子xUBF诱导产生的DNA超螺旋结构需要其五个HMG框中的三个。
Nucleic Acids Res. 1996 Aug 15;24(16):3208-15. doi: 10.1093/nar/24.16.3208.
2
Metazoan rDNA enhancer acts by making more genes transcriptionally active.后生动物核糖体DNA增强子通过使更多基因具有转录活性来发挥作用。
J Cell Biol. 1996 Jun;133(5):943-54. doi: 10.1083/jcb.133.5.943.
3
Transcriptional enhancers act in cis to suppress position-effect variegation.转录增强子以顺式作用抑制位置效应斑驳。
Genes Dev. 1996 Jan 15;10(2):185-95. doi: 10.1101/gad.10.2.185.
4
DNA template and activator-coactivator requirements for transcriptional synergism by Drosophila bicoid.果蝇双胸蛋白转录协同作用的DNA模板及激活因子-共激活因子需求
Science. 1995 Dec 15;270(5243):1825-8. doi: 10.1126/science.270.5243.1825.
5
Multiple TAFIIs directing synergistic activation of transcription.多个转录起始因子IID协同激活转录。
Science. 1995 Dec 15;270(5243):1783-8. doi: 10.1126/science.270.5243.1783.
6
In vitro definition of the yeast RNA polymerase I enhancer.酵母RNA聚合酶I增强子的体外定义
Mol Cell Biol. 1993 May;13(5):2644-54. doi: 10.1128/mcb.13.5.2644-2654.1993.
7
A TBP-containing multiprotein complex (TIF-IB) mediates transcription specificity of murine RNA polymerase I.一种含TBP的多蛋白复合物(TIF-IB)介导小鼠RNA聚合酶I的转录特异性。
Nucleic Acids Res. 1993 Sep 11;21(18):4180-6. doi: 10.1093/nar/21.18.4180.
8
Functional differences between the two splice variants of the nucleolar transcription factor UBF: the second HMG box determines specificity of DNA binding and transcriptional activity.核仁转录因子UBF的两种剪接变体之间的功能差异:第二个HMG框决定DNA结合的特异性和转录活性。
EMBO J. 1994 Jan 15;13(2):416-24. doi: 10.1002/j.1460-2075.1994.tb06276.x.
9
Ribosomal gene promoter domains can function as artificial enhancers of RNA polymerase I transcription, supporting a promoter origin for natural enhancers in Xenopus.核糖体基因启动子结构域可作为RNA聚合酶I转录的人工增强子,这支持了非洲爪蟾中天然增强子的启动子起源。
Proc Natl Acad Sci U S A. 1994 Jan 18;91(2):464-8. doi: 10.1073/pnas.91.2.464.
10
xUBF, an RNA polymerase I transcription factor, binds crossover DNA with low sequence specificity.xUBF是一种RNA聚合酶I转录因子,它以低序列特异性结合交叉DNA。
Mol Cell Biol. 1994 May;14(5):2871-82. doi: 10.1128/mcb.14.5.2871-2882.1994.