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二硫键连接的β-折叠蛋白腱糖淀粉酶的折叠:无疏水塌缩的快速两态折叠

Folding of the disulfide-bonded beta-sheet protein tendamistat: rapid two-state folding without hydrophobic collapse.

作者信息

Schönbrunner N, Koller K P, Kiefhaber T

机构信息

Department of Biophysical Chemistry, Biozentrum der Universität Basel,Switzerland.

出版信息

J Mol Biol. 1997 May 2;268(2):526-38. doi: 10.1006/jmbi.1997.0960.

DOI:10.1006/jmbi.1997.0960
PMID:9159488
Abstract

We investigated the reversible folding and unfolding reactions of the small 74 amino acid residue protein tendamistat. The secondary structure of tendamistat contains only beta-sheets and loop regions and the protein contains two disulfide bonds. Fluorescence-detected refolding kinetics of tendamistat (disulfide bonds intact) comprise of a major rapid fast reaction (tau = 10 ms in water) and two minor slow reactions. In the fast reaction 80% of the unfolded molecules are converted to native protein. The two slow reactions are part of a parallel slow folding pathway. On this pathway the rate-limiting step in the formation of native molecules is cis to trans isomerization of at least one of the three trans Xaa-Pro peptide bonds. This reaction is catalyzed efficiently by the enzyme peptidyl-prolyl cis-trans isomerase. Comparison of kinetic data with equilibrium unfolding transitions shows that the fast folding pathway follows a two-state process without populated intermediate states. Additionally, various sensitive tests did not detect any rapid chain collapse during tendamistat folding prior to the acquisition of the native three-dimensional structure. These results show that pre-formed disulfide bonds do not prevent efficient and rapid protein folding.

摘要

我们研究了由74个氨基酸残基组成的小分子蛋白质腱糖淀粉酶的可逆折叠与去折叠反应。腱糖淀粉酶的二级结构仅包含β-折叠片层和环区,且该蛋白质含有两个二硫键。腱糖淀粉酶(二硫键完整)的荧光检测复性动力学由一个主要的快速反应(在水中τ = 10毫秒)和两个次要的慢速反应组成。在快速反应中,80%的去折叠分子转化为天然蛋白质。这两个慢速反应是平行慢速折叠途径的一部分。在该途径中,天然分子形成的限速步骤是三个反式Xaa-Pro肽键中至少一个的顺式到反式异构化。该反应由肽基脯氨酰顺反异构酶高效催化。动力学数据与平衡去折叠转变的比较表明,快速折叠途径遵循一个无中间态聚集的两态过程。此外,各种灵敏测试在腱糖淀粉酶获得天然三维结构之前的折叠过程中未检测到任何快速的链塌陷。这些结果表明,预先形成的二硫键并不妨碍蛋白质的高效快速折叠。

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引用本文的文献

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Effects of disulfide bonds on folding behavior and mechanism of the beta-sheet protein tendamistat.二硫键对β-折叠蛋白腱糖胺聚糖折叠行为及机制的影响
Biophys J. 2006 Jan 1;90(1):272-86. doi: 10.1529/biophysj.105.063552. Epub 2005 Oct 7.
2
Unfolding and refolding of juvenile hormone binding protein.保幼激素结合蛋白的去折叠与重折叠
Biophys J. 2004 Feb;86(2):1138-48. doi: 10.1016/S0006-3495(04)74188-0.
3
Folding rate prediction using total contact distance.使用总接触距离进行折叠率预测。
Biophys J. 2002 Jan;82(1 Pt 1):458-63. doi: 10.1016/S0006-3495(02)75410-6.
4
A partially folded intermediate species of the beta-sheet protein apo-pseudoazurin is trapped during proline-limited folding.在脯氨酸受限的折叠过程中捕获到了β-折叠蛋白脱辅基假蓝蛋白的部分折叠中间物种。
Protein Sci. 2001 Jun;10(6):1216-24. doi: 10.1110/ps.52801.
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Denaturant-induced movement of the transition state of protein folding revealed by high-pressure stopped-flow measurements.高压停流测量揭示变性剂诱导的蛋白质折叠过渡态移动
Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):17-22. doi: 10.1073/pnas.97.1.17.
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The speed limit for protein folding measured by triplet-triplet energy transfer.通过三重态-三重态能量转移测量的蛋白质折叠速度限制。
Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9597-601. doi: 10.1073/pnas.96.17.9597.