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离子对单个DNA分子弹性的影响。

Ionic effects on the elasticity of single DNA molecules.

作者信息

Baumann C G, Smith S B, Bloomfield V A, Bustamante C

机构信息

Department of Biochemistry, University of Minnesota, St. Paul, MN 55108, USA.

出版信息

Proc Natl Acad Sci U S A. 1997 Jun 10;94(12):6185-90. doi: 10.1073/pnas.94.12.6185.

Abstract

We used a force-measuring laser tweezers apparatus to determine the elastic properties of lambda-bacteriophage DNA as a function of ionic strength and in the presence of multivalent cations. The electrostatic contribution to the persistence length P varied as the inverse of the ionic strength in monovalent salt, as predicted by the standard worm-like polyelectrolyte model. However, ionic strength is not always the dominant variable in determining the elastic properties of DNA. Monovalent and multivalent ions have quite different effects even when present at the same ionic strength. Multivalent ions lead to P values as low as 250-300 A, well below the high-salt "fully neutralized" value of 450-500 A characteristic of DNA in monovalent salt. The ions Mg2+ and Co(NH3)63+, in which the charge is centrally concentrated, yield lower P values than the polyamines putrescine2+ and spermidine3+, in which the charge is linearly distributed. The elastic stretch modulus, S, and P display opposite trends with ionic strength, in contradiction to predictions of macroscopic elasticity theory. DNA is well described as a worm-like chain at concentrations of trivalent cations capable of inducing condensation, if condensation is prevented by keeping the molecule stretched. A retractile force appears in the presence of multivalent cations at molecular extensions that allow intramolecular contacts, suggesting condensation in stretched DNA occurs by a "thermal ratchet" mechanism.

摘要

我们使用测力激光镊子装置来确定λ噬菌体DNA的弹性特性,该特性是离子强度的函数,并研究了在多价阳离子存在的情况下其弹性特性。正如标准的蠕虫状聚电解质模型所预测的那样,在单价盐中,静电对持久长度P的贡献随离子强度的倒数而变化。然而,离子强度并不总是决定DNA弹性特性的主要变量。即使在相同的离子强度下,单价离子和多价离子也有截然不同的影响。多价离子导致P值低至250 - 300埃,远低于单价盐中DNA的高盐“完全中和”值450 - 500埃。电荷集中在中心的Mg2+和Co(NH3)63+离子产生的P值低于电荷呈线性分布的多胺腐胺2+和亚精胺3+。弹性拉伸模量S和P随离子强度呈现相反的趋势,这与宏观弹性理论的预测相矛盾。如果通过保持分子伸展来防止凝聚,那么在能够诱导凝聚的三价阳离子浓度下,DNA可以很好地被描述为蠕虫状链。在多价阳离子存在的情况下,当分子伸展允许分子内接触时会出现收缩力,这表明拉伸DNA中的凝聚是通过“热棘轮”机制发生的。

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