Winzeler E, Shapiro L
Department of Developmental Biology, Stanford University School of Medicine, California 94305-5427, USA.
J Bacteriol. 1997 Jun;179(12):3981-8. doi: 10.1128/jb.179.12.3981-3988.1997.
The expression of the Caulobacter crescentus homolog of dnaX, which in Escherichia coli encodes both the gamma and tau subunits of the DNA polymerase III holoenzyme, is subject to cell cycle control. We present evidence that the first amino acid in the predicted DnaX protein corresponds to the first codon in the mRNA transcribed from the dnaX promoter; thus, the ribosome must recognize the mRNA at a site downstream of the start codon in an unusual but not unprecedented fashion. Inserting four bases in front of the AUG at the 5' end of dnaX mRNA abolishes translation in the correct frame. The sequence upstream of the translational start site shows little homology to the canonical Shine-Dalgarno ribosome recognition sequence, but the region downstream of the start codon is complementary to a region of 16S rRNA implicated in downstream box recognition. The region downstream of the dnaX AUG, which is important for efficient translation, exhibits homology with the corresponding region from the Caulobacter hemE gene adjacent to the replication origin. The hemE gene also appears to be translated from a leaderless mRNA. Additionally, as was found for hemE, an upstream untranslated mRNA also extends into the dnaX coding sequence. We propose that translation of leaderless mRNAs may provide a mechanism by which the ribosome can distinguish between productive and nonproductive templates.
在大肠杆菌中编码DNA聚合酶III全酶的γ和τ亚基的dnaX基因,其新月柄杆菌同源物的表达受细胞周期控制。我们提供的证据表明,预测的DnaX蛋白中的第一个氨基酸对应于从dnaX启动子转录的mRNA中的第一个密码子;因此,核糖体必须以一种不寻常但并非史无前例的方式在起始密码子下游的位点识别mRNA。在dnaX mRNA 5'端的AUG之前插入四个碱基会消除正确阅读框中的翻译。翻译起始位点上游的序列与典型的Shine-Dalgarno核糖体识别序列几乎没有同源性,但起始密码子下游的区域与参与下游框识别的16S rRNA区域互补。对有效翻译很重要的dnaX AUG下游区域,与来自靠近复制起点的新月柄杆菌hemE基因的相应区域具有同源性。hemE基因似乎也从无引导mRNA进行翻译。此外,正如在hemE中发现的那样,上游非翻译mRNA也延伸到dnaX编码序列中。我们提出,无引导mRNA的翻译可能提供了一种机制,通过该机制核糖体可以区分有生产性和无生产性的模板。