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大肠杆菌DNA聚合酶III全酶的γ亚基是通过核糖体移码产生的。

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting.

作者信息

Flower A M, McHenry C S

机构信息

Department of Biochemistry, Biophysics and Genetics, University of Colorado Health Sciences Center, Denver 80262.

出版信息

Proc Natl Acad Sci U S A. 1990 May;87(10):3713-7. doi: 10.1073/pnas.87.10.3713.

DOI:10.1073/pnas.87.10.3713
PMID:2187190
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC53973/
Abstract

The tau and gamma subunits of DNA polymerase III holoenzyme are both products of the dnaX gene. Since tau and gamma are required as stoichiometric components of the replicative complex, a mechanism must exist for the cell to coordinate their synthesis and ensure that both subunits are present in an adequate quantity and ratio for assembly. We have proposed that gamma is produced by a translational frameshift event. In this report, we describe the use of dnaX-lacZ fusions in all three reading frames to demonstrate that gamma, the shorter product of dnaX, is generated by ribosomal frameshifting to the -1 reading frame of the mRNA within an oligo(A) sequence that is followed by a sequence predicted to form a stable secondary structure. Immediately after frameshifting a stop codon is encountered, leading to translational termination. Mutagenesis of the oligo(A) sequence abolishes frameshifting, and partial disruption of the predicted distal secondary structure severely impairs the efficiency. Comparison of the expression of lacZ fused to dnaX distal to the site of frameshifting in the -1 and 0 reading frames indicates that the efficiency of frameshifting is approximately 40%.

摘要

DNA聚合酶III全酶的τ亚基和γ亚基均为dnaX基因的产物。由于τ和γ是复制复合物的化学计量组分,细胞必定存在一种机制来协调它们的合成,并确保两个亚基都以适当的数量和比例存在以进行组装。我们曾提出γ是由翻译移码事件产生的。在本报告中,我们描述了在所有三个阅读框中使用dnaX-lacZ融合体,以证明dnaX的较短产物γ是通过核糖体移码至mRNA的-1阅读框而产生的,该移码发生在一个寡聚(A)序列内,该序列之后是一个预计会形成稳定二级结构的序列。移码后立即遇到一个终止密码子,导致翻译终止。寡聚(A)序列的诱变消除了移码,并且预测的远端二级结构的部分破坏严重损害了移码效率。在-1和0阅读框中,对移码位点远端与dnaX融合的lacZ的表达进行比较表明,移码效率约为40%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8184/53973/19e0b5a09f14/pnas01035-0090-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8184/53973/eb90acf24247/pnas01035-0089-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8184/53973/19e0b5a09f14/pnas01035-0090-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8184/53973/eb90acf24247/pnas01035-0089-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8184/53973/19e0b5a09f14/pnas01035-0090-a.jpg

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Proc Natl Acad Sci U S A. 1990 May;87(10):3713-7. doi: 10.1073/pnas.87.10.3713.
2
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本文引用的文献

1
The beta subunit of the DNA polymerase III holoenzyme becomes inaccessible to antibody after formation of an initiation complex with primed DNA.DNA聚合酶III全酶的β亚基在与引发DNA形成起始复合物后,抗体无法再与之结合。
J Biol Chem. 1982 Oct 25;257(20):12310-5.
2
Size classes of products synthesized processively by two subassemblies of Escherichia coli DNA polymerase III holoenzyme.由大肠杆菌DNA聚合酶III全酶的两个亚组件连续合成的产物的大小类别。
J Biol Chem. 1982 May 25;257(10):5692-9.
3
The dnaN gene codes for the beta subunit of DNA polymerase III holoenzyme of escherichia coli.
通过翻译组学对 中的非编码移码抑制进行系统分析。
Proc Natl Acad Sci U S A. 2024 Feb 6;121(6):e2317453121. doi: 10.1073/pnas.2317453121. Epub 2024 Jan 30.
4
The distinct translational landscapes of gram-negative Salmonella and gram-positive Listeria.革兰氏阴性沙门氏菌和革兰氏阳性李斯特菌的独特翻译景观。
Nat Commun. 2023 Dec 9;14(1):8167. doi: 10.1038/s41467-023-43759-1.
5
Nontriplet feature of genetic code in ciliates is a result of neutral evolution.纤毛虫遗传密码的非同三联体特征是中性进化的结果。
Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221683120. doi: 10.1073/pnas.2221683120. Epub 2023 May 22.
6
The Escherichia coli clamp loader rapidly remodels SSB on DNA to load clamps.大肠杆菌夹钳加载器能快速重塑 DNA 上的单链结合蛋白以加载夹钳。
Nucleic Acids Res. 2022 Dec 9;50(22):12872-12884. doi: 10.1093/nar/gkac1169.
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Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic .嗜热温泉栖生物相对亲代的耐热性
Microbiol Spectr. 2022 Dec 21;10(6):e0160622. doi: 10.1128/spectrum.01606-22. Epub 2022 Oct 26.
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Direct visualization of translesion DNA synthesis polymerase IV at the replisome.在复制体上直接观察到跨损伤 DNA 合成聚合酶 IV。
Proc Natl Acad Sci U S A. 2022 Sep 27;119(39):e2208390119. doi: 10.1073/pnas.2208390119. Epub 2022 Sep 19.
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Variance in translational fidelity of different bacterial species is affected by pseudouridines in the tRNA anticodon stem-loop.不同细菌物种翻译保真度的差异受 tRNA 反密码子茎环中的假尿嘧啶核苷的影响。
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LI-Detector: a Method for Curating Ordered Gene-Replacement Libraries.LI-Detector:一种用于构建有序基因替换文库的方法。
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dnaN基因编码大肠杆菌DNA聚合酶III全酶的β亚基。
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4
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Adenosine 5'-O-(3-thiotriphosphate) can support the formation of an initiation complex between the DNA polymerase III holoenzyme and primed DNA.腺苷 5'-O-(3-硫代三磷酸) 能够支持 DNA 聚合酶 III 全酶与引发的 DNA 之间形成起始复合物。
J Biol Chem. 1984 Apr 10;259(7):4589-95.
6
Identification of the epsilon-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: a fidelity subunit for DNA replication.鉴定大肠杆菌DNA聚合酶III全酶的ε亚基为dnaQ基因产物:DNA复制的保真亚基。
Proc Natl Acad Sci U S A. 1983 Dec;80(23):7085-9. doi: 10.1073/pnas.80.23.7085.
7
The dnaX gene encodes the DNA polymerase III holoenzyme tau subunit, precursor of the gamma subunit, the dnaZ gene product.dnaX基因编码DNA聚合酶III全酶的τ亚基,γ亚基的前体,即dnaZ基因产物。
Mol Gen Genet. 1983;192(1-2):80-6. doi: 10.1007/BF00327650.
8
Mutator strains of Escherichia coli, mutD and dnaQ, with defective exonucleolytic editing by DNA polymerase III holoenzyme.大肠杆菌的突变菌株mutD和dnaQ,其DNA聚合酶III全酶的核酸外切酶编辑功能存在缺陷。
Proc Natl Acad Sci U S A. 1983 Apr;80(8):2189-92. doi: 10.1073/pnas.80.8.2189.
9
The interaction of DNA polymerase III and the product of the Escherichia coli mutator gene, mutD.DNA聚合酶III与大肠杆菌诱变基因mutD产物的相互作用。
J Biol Chem. 1984 May 10;259(9):5567-73.
10
Cloning of the Escherichia coli dnaZX region and identification of its products.大肠杆菌dnaZX区域的克隆及其产物的鉴定。
Mol Gen Genet. 1983;192(1-2):73-9. doi: 10.1007/BF00327649.