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预测找到 HLA 匹配供体可能性的计算机程序:方法、验证及应用

Computer program to predict likelihood of finding and HLA-matched donor: methodology, validation, and application.

作者信息

Mori M, Graves M, Milford E L, Beatty P G

机构信息

Department of Oncological Sciences, Huntsman Cancer Institute, Salt Lake City, UT 84108, USA.

出版信息

Biol Blood Marrow Transplant. 1996 Oct;2(3):134-44.

PMID:9199756
Abstract

Approximately 65% of the patients requiring bone marrow transplantation do not have an HLA-A, -B, -DR identical sibling and therefore need to find a phenotypically matched unrelated donor. As of June 30, 1996, the National Marrow Donor Program maintains a registry of 2.31 million volunteer donors, 35% of whom are fully typed for HLA-A, -B, -DR loci. Because a majority of the donors has not been DR typed, a patient who does not find a complete match at the time of the preliminary search may elect to prospectively DR type A, B matched and A, B one-antigen mismatched donors. An efficient strategy is therefore needed for determining the likelihood that an appropriate donor exists and for deciding which of the donors that have not yet been DR typed should be tested for DR matching with the candidate. We developed a mathematical algorithm and computer program to facilitate the search for a suitable donor by donor race and phenotype. The program provides information on the likelihood of 1) finding at least one HLA-A, -B, -DR phenotypically matched donor, 2) the likelihood of finding at least one DR match among m A, B matched donors who have not yet been DR typed, and 3) the likelihood of an A, B one antigen mismatched donor of a specific phenotype being a DR match with the patient. The mathematical models underlying the program are based on basic population genetics theory and utilize HLA-A, -B, DR haplotype frequencies derived from the NMDP registry. The results of the validation study show that the prediction is highly accurate at the level of broad antigens. The algorithm and program have the potential to assist patients and physicians in optimizing their decisions regarding clinical management and resource allocation on the process of searching for a suitable unrelated bone marrow donor.

摘要

大约65%需要进行骨髓移植的患者没有HLA - A、- B、- DR完全相同的同胞,因此需要寻找表型匹配的无关供者。截至1996年6月30日,国家骨髓供者计划拥有一个231万志愿者供者的登记库,其中35%的供者已对HLA - A、- B、- DR位点进行了全面分型。由于大多数供者尚未进行DR分型,在初步搜索时未找到完全匹配供者的患者可以选择对A、B位点匹配以及A、B位点一个抗原不匹配的供者进行前瞻性DR分型。因此,需要一种有效的策略来确定存在合适供者的可能性,并决定哪些尚未进行DR分型的供者应进行与候选者的DR匹配检测。我们开发了一种数学算法和计算机程序,以促进按供者种族和表型寻找合适的供者。该程序提供以下方面可能性的信息:1)找到至少一个HLA - A、- B、- DR表型匹配供者的可能性;2)在m个尚未进行DR分型的A、B位点匹配供者中找到至少一个DR匹配供者的可能性;3)特定表型的A、B位点一个抗原不匹配供者与患者DR匹配的可能性。该程序所基于的数学模型以基本群体遗传学理论为基础,并利用从国家骨髓供者计划登记库得出的HLA - A、- B、DR单倍型频率。验证研究结果表明,在宽抗原水平上预测高度准确。该算法和程序有潜力帮助患者和医生在寻找合适的无关骨髓供者过程中优化其关于临床管理和资源分配的决策。

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