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水合的集体性质:疏水相互作用的长程性和特异性。

Collective properties of hydration: long range and specificity of hydrophobic interactions.

作者信息

Martorana V, Bulone D, San Biagio P L, Palma-Vittorelli M B, Palma M U

机构信息

Istituto Nazionale di Fisica Della Materia at Department of Physics, Palermo, Italy.

出版信息

Biophys J. 1997 Jul;73(1):31-7. doi: 10.1016/S0006-3495(97)78044-5.

Abstract

We report results of molecular dynamics (MD) simulations of composite model solutes in explicit molecular water solvent, eliciting novel aspects of the recently demonstrated, strong many-body character of hydration. Our solutes consist of identical apolar (hydrophobic) elements in fixed configurations. Results show that the many-body character of PMF is sufficiently strong to cause 1) a remarkable extension of the range of hydrophobic interactions between pairs of solute elements, up to distances large enough to rule out pairwise interactions of any type, and 2) a SIF that drives one of the hydrophobic solute elements toward the solvent rather than away from it. These findings complement recent data concerning SIFs on a protein at single-residue resolution and on model systems. They illustrate new important consequences of the collective character of hydration and of PMF and reveal new aspects of hydrophobic interactions and, in general, of SIFs. Their relevance to protein recognition, conformation, function, and folding and to the observed slight yet significant nonadditivity of functional effects of distant point mutations in proteins is discussed. These results point out the functional role of the configurational and dynamical states (and related statistical weights) corresponding to the complex configurational energy landscape of the two interacting systems: biomolecule + water.

摘要

我们报告了在明确的分子水溶剂中复合模型溶质的分子动力学(MD)模拟结果,揭示了最近所证明的水合作用强大多体特性的新方面。我们的溶质由处于固定构型的相同非极性(疏水)元素组成。结果表明,PMF的多体特性足够强大,足以导致:1)溶质元素对之间疏水相互作用范围的显著扩展,直至距离大到足以排除任何类型的成对相互作用;2)一种溶剂诱导力(SIF),它驱使一个疏水溶质元素朝向溶剂而非远离溶剂。这些发现补充了最近关于单残基分辨率下蛋白质和模型系统上的溶剂诱导力的相关数据。它们阐明了水合作用和PMF集体特性的新重要结果,并揭示了疏水相互作用以及一般溶剂诱导力的新方面。讨论了它们与蛋白质识别、构象、功能和折叠以及蛋白质中远距离点突变功能效应观察到的轻微但显著的非加和性的相关性。这些结果指出了与两个相互作用系统(生物分子+水)复杂构型能量景观相对应的构型和动力学状态(以及相关统计权重)的功能作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/71a2/1180905/7449989cf37e/biophysj00032-0043-a.jpg

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