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Plant ribosome shunting in vitro.植物核糖体体外跳跃
Nucleic Acids Res. 1997 Jul 15;25(14):2854-60. doi: 10.1093/nar/25.14.2854.
2
Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus.水稻东格鲁杆状类逆转录病毒中的核糖体跳跃机制。
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Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation.植物类逆转录病毒水稻东格鲁杆状病毒翻译过程中依赖位置的ATT起始
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4
Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause rice tungro disease.短开放阅读框依赖性核糖体穿梭作用于引起水稻矮缩病的 RNA 微小 RNA 样病毒和 DNA 反转录病毒。
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Ribosome shunting in the cauliflower mosaic virus 35S RNA leader is a special case of reinitiation of translation functioning in plant and animal systems.花椰菜花叶病毒35S RNA前导序列中的核糖体跳跃是在植物和动物系统中发挥作用的翻译重新起始的一种特殊情况。
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Role of a short open reading frame in ribosome shunt on the cauliflower mosaic virus RNA leader.一个短开放阅读框在花椰菜花叶病毒RNA前导序列的核糖体跳跃中的作用。
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Ribosome shunting in cauliflower mosaic virus. Identification of an essential and sufficient structural element.花椰菜花叶病毒中的核糖体跳跃。一个必需且充分的结构元件的鉴定。
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Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA in transgenic tobacco plants.转基因烟草植株中花椰菜花叶病毒35S RNA上的非线性核糖体迁移
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A stable hairpin preceded by a short open reading frame promotes nonlinear ribosome migration on a synthetic mRNA leader.一个由短开放阅读框引导的稳定发夹结构促进了核糖体在合成mRNA前导序列上的非线性迁移。
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Cell-free riboswitches.无细胞核糖开关
RSC Chem Biol. 2021 Aug 4;2(5):1430-1440. doi: 10.1039/d1cb00138h. eCollection 2021 Oct 7.
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Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting.竞争途径通过 tRNA 修饰和核糖体移码调控宿主抗病毒反应。
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Genomic analysis of codon, sequence and structural conservation with selective biochemical-structure mapping reveals highly conserved and dynamic structures in rotavirus RNAs with potential cis-acting functions.通过对密码子、序列和结构保守性的基因组分析,并结合选择性生化结构作图,揭示了轮状病毒 RNA 中高度保守且动态的结构,这些结构具有潜在的顺式作用功能。
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Molecular dissection of the prototype foamy virus (PFV) RNA 5'-UTR identifies essential elements of a ribosomal shunt.原型泡沫病毒(PFV)RNA 5'-非翻译区的分子剖析确定了核糖体跳跃的关键元件。
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Bridging IRES elements in mRNAs to the eukaryotic translation apparatus.将mRNA中的内部核糖体进入位点(IRES)元件与真核翻译装置相连接。
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Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus.水稻东格鲁杆状类逆转录病毒中的核糖体跳跃机制。
RNA. 2006 May;12(5):841-50. doi: 10.1261/rna.2285806. Epub 2006 Mar 23.
8
Viral strategies of translation initiation: ribosomal shunt and reinitiation.病毒的翻译起始策略:核糖体移码和重新起始。
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The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site.人类免疫缺陷病毒1型gag基因编码一个内部核糖体进入位点。
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Termination and peptide release at the upstream open reading frame are required for downstream translation on synthetic shunt-competent mRNA leaders.在具有合成分流能力的mRNA前导序列上进行下游翻译时,上游开放阅读框的终止和肽释放是必需的。
Mol Cell Biol. 2000 Sep;20(17):6212-23. doi: 10.1128/MCB.20.17.6212-6223.2000.

本文引用的文献

1
Alternative structures of the cauliflower mosaic virus 35 S RNA leader: implications for viral expression and replication.花椰菜花叶病毒35S RNA前导序列的替代结构:对病毒表达和复制的影响。
J Mol Biol. 1997 Apr 18;267(5):1075-88. doi: 10.1006/jmbi.1997.0929.
2
Efficient transcription from the rice tungro bacilliform virus promoter requires elements downstream of the transcription start site.水稻东格鲁杆状病毒启动子的高效转录需要转录起始位点下游的元件。
J Virol. 1996 Dec;70(12):8411-21. doi: 10.1128/JVI.70.12.8411-8421.1996.
3
Cellular proteins bind to multiple sites of the leader region of cauliflower mosaic virus 35S RNA.细胞蛋白质与花椰菜花叶病毒35S RNA前导区的多个位点结合。
Virology. 1996 Dec 15;226(2):374-83. doi: 10.1006/viro.1996.0665.
4
Methylation of coding region alone inhibits gene expression in plant protoplasts.仅编码区的甲基化就会抑制植物原生质体中的基因表达。
Proc Natl Acad Sci U S A. 1996 Aug 6;93(16):8334-9. doi: 10.1073/pnas.93.16.8334.
5
Selective translation initiation by ribosome jumping in adenovirus-infected and heat-shocked cells.腺病毒感染和热休克细胞中核糖体跳跃引发的选择性翻译起始
Genes Dev. 1996 Jun 15;10(12):1557-67. doi: 10.1101/gad.10.12.1557.
6
Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation.植物类逆转录病毒水稻东格鲁杆状病毒翻译过程中依赖位置的ATT起始
J Virol. 1996 May;70(5):2999-3010. doi: 10.1128/JVI.70.5.2999-3010.1996.
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Nucleocytoplasmic transport.核质运输
Science. 1996 Mar 15;271(5255):1513-8. doi: 10.1126/science.271.5255.1513.
8
Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA.花椰菜花叶病毒35S RNA上的非线性核糖体迁移
Cell. 1993 May 21;73(4):789-802. doi: 10.1016/0092-8674(93)90257-q.
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Splicing in a plant pararetrovirus.
Virology. 1994 Feb;198(2):663-70. doi: 10.1006/viro.1994.1078.
10
Specific inhibition of hepatitis C virus expression by antisense oligodeoxynucleotides. In vitro model for selection of target sequence.反义寡脱氧核苷酸对丙型肝炎病毒表达的特异性抑制。用于选择靶序列的体外模型。
J Biol Chem. 1994 May 13;269(19):14205-10.

植物核糖体体外跳跃

Plant ribosome shunting in vitro.

作者信息

Schmidt-Puchta W, Dominguez D, Lewetag D, Hohn T

机构信息

Friedrich Miescher Institute, PO Box 2543, CH-4002 Basel, Switzerland.

出版信息

Nucleic Acids Res. 1997 Jul 15;25(14):2854-60. doi: 10.1093/nar/25.14.2854.

DOI:10.1093/nar/25.14.2854
PMID:9207035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC146814/
Abstract

It has been proposed that cauliflower mosaic virus 35S RNA with its 600 nt long leader uses an unusual translation process (the translational shunt). A wheat germ in vitro translation assay was used to improve the study of this mechanism. Deletions, the introduction of stable stem-loop structures, and the inhibitory effect of antisense oligonucleotides on gene expression were used to determine the roles of various parts of the leader. It was found that the 5'- and 3'-ends of the leader are absolutely required for translation whereas the middle part is apparently dispensable. These results confirm the data already reported from transient expression experiments with protoplasts. However, the in vitro data suggest in contrast to protoplast experiments that only two relatively short regions at both ends, approximately 100 nt each, are required. The in vitro system provides tools for further studying the shunt model at the molecular level and for examining the involvement of proteins in this mechanism. Shunting was also found to occur with the rice tungro bacilliform virus leader. As wheat is neither a host plant of cauliflower mosaic virus nor rice tungro bacilliform virus, the shunt seems to be host independent, a finding that deviates from earlier studies in protoplasts.

摘要

有人提出,花椰菜花叶病毒35S RNA及其600个核苷酸长的前导序列采用一种不寻常的翻译过程(翻译跳跃)。利用小麦胚芽体外翻译试验来改进对这一机制的研究。通过缺失、引入稳定的茎环结构以及反义寡核苷酸对基因表达的抑制作用来确定前导序列各部分的作用。结果发现,前导序列的5′端和3′端对于翻译是绝对必需的,而中间部分显然是可有可无的。这些结果证实了原生质体瞬时表达实验已报道的数据。然而,与原生质体实验相反,体外实验数据表明,只需要两端两个相对较短的区域,每个区域大约100个核苷酸。该体外系统为在分子水平上进一步研究跳跃模型以及研究蛋白质在这一机制中的作用提供了工具。还发现水稻东格鲁杆状病毒的前导序列也会发生跳跃。由于小麦既不是花椰菜花叶病毒的寄主植物,也不是水稻东格鲁杆状病毒的寄主植物,这种跳跃似乎不依赖寄主,这一发现与原生质体的早期研究结果不同。