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锁式探针揭示了人类13号和21号染色体着丝粒序列的单核苷酸差异、起源亲本及原位分布。

Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21.

作者信息

Nilsson M, Krejci K, Koch J, Kwiatkowski M, Gustavsson P, Landegren U

机构信息

Beijer Laboratory, Department of Medical Genetics, Uppsala, Sweden.

出版信息

Nat Genet. 1997 Jul;16(3):252-5. doi: 10.1038/ng0797-252.

DOI:10.1038/ng0797-252
PMID:9207789
Abstract

Chromosome centromeres, composed of repeated DNA sequences, orchestrate the correct segregation of chromatids in cell division. We have examined the centromeres of human chromosomes 13 and 21 by studying the distribution, in situ, of two alpha satellite sequences that differ in a single nucleotide position. This was possible using padlock probes, oligo-nucleotides that can be ligated into circles upon target recognition. The segregation of individual 13 and 21 homologues in a family was followed by monitoring of the signals from two differentially labelled probes, specific for either sequence variant. A characteristic arrangement of the repeat motifs in three separate spots, oriented transverse to the length axis of the metaphase chromosomes and bilaterally symmetric, indicates that only parts of the detected regions are involved in the centromeric region, joining the sister chromatids before anaphase.

摘要

染色体着丝粒由重复的DNA序列组成,在细胞分裂过程中协调染色单体的正确分离。我们通过研究两个仅在单个核苷酸位置不同的α卫星序列的原位分布,对人类13号和21号染色体的着丝粒进行了检测。这可以利用锁式探针实现,锁式探针是一种寡核苷酸,在识别靶标后可连接成环。通过监测来自两个分别针对不同序列变体的差异标记探针的信号,追踪了一个家族中13号和21号同源染色体的个体分离情况。重复基序在三个独立位点呈特征性排列,垂直于中期染色体的长度轴且左右对称,这表明检测到的区域中只有部分参与着丝粒区域,在后期之前连接姐妹染色单体。

相似文献

1
Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21.锁式探针揭示了人类13号和21号染色体着丝粒序列的单核苷酸差异、起源亲本及原位分布。
Nat Genet. 1997 Jul;16(3):252-5. doi: 10.1038/ng0797-252.
2
PCR-generated padlock probes distinguish homologous chromosomes through quantitative fluorescence analysis.聚合酶链式反应(PCR)生成的锁式探针通过定量荧光分析区分同源染色体。
Eur J Hum Genet. 2003 May;11(5):357-63. doi: 10.1038/sj.ejhg.5200966.
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FISH with a twist.
Nat Genet. 1997 Jul;16(3):217-8. doi: 10.1038/ng0797-217.
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Structural rearrangements and insertions of dispersed elements in pericentromeric alpha satellites occur preferably at kinkable DNA sites.着丝粒周围α卫星中分散元件的结构重排和插入,优先发生在可弯曲DNA位点。
J Mol Biol. 2001 Jan 5;305(1):33-48. doi: 10.1006/jmbi.2000.4270.
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Double color in situ hybridization of alpha-satellite chromosome 13, 21 specific cosmid clones for a rapid screening of their specificity.用于快速筛选α卫星13号和21号染色体特异性黏粒克隆特异性的双色原位杂交。
Tsitol Genet. 1998 Jul-Aug;32(4):60-4.
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A degenerate alpha satellite probe, detecting a centromeric deletion on chromosome 21 in an apparently normal human male, shows limitations of the use of satellite DNA probes for interphase ploidy analysis.一个退化的α卫星探针,在一名外表正常的男性中检测到21号染色体上的着丝粒缺失,这显示了卫星DNA探针在间期倍性分析中的应用局限性。
Anal Cell Pathol. 1992 Mar;4(2):81-6.
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[Human alpha-satellite DNA specific to chromosomes 13 and 21: use for the analysis of polymorphism of acrocentric chromosomes and the origin of the additional chromosome 21 in Down's syndrome].[人类13号和21号染色体特异性α卫星DNA:用于近端着丝粒染色体多态性分析及唐氏综合征中额外21号染色体的起源研究]
Genetika. 1991 Sep;27(9):1637-47.
8
[Study of alpha-satellite DNA in cosmid libraries, specific for chromosomes 13, 21, and 22, using fluorescence in situ hybridization].[使用荧光原位杂交技术对13号、21号和22号染色体特异性黏粒文库中的α卫星DNA进行研究]
Genetika. 1998 Nov;34(11):1470-9.
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Relating centromeric topography in fixed human chromosomes to α-satellite DNA and CENP-B distribution.将固定人类染色体中的着丝粒拓扑结构与α卫星DNA和CENP-B分布相关联。
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Contiguous arrays of satellites 1, 3, and beta form a 1.5-Mb domain on chromosome 22p.卫星1、3和β的相邻阵列在22号染色体短臂上形成一个1.5兆碱基的结构域。
Genomics. 1997 Aug 15;44(1):35-44. doi: 10.1006/geno.1997.4817.

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