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生物对称性和周期性的原子基础。

The atomic basis of biological symmetry and periodicity.

作者信息

Lima-de-Faria A

机构信息

Institute of Genetics University of Lund, Sweden.

出版信息

Biosystems. 1997;43(2):115-35. doi: 10.1016/s0303-2647(97)01694-8.

Abstract

Geometric derivations and mathematical formulas have shown how the symmetrical patterns of plants, animals and crystals, follow similar mathematical solutions. These transformations have had the great value of indicating relationships between different types of patterns. However, they could neither shed light on the material processes that led to the emergence of symmetries in nature, nor explain their transfer to higher levels of organization, as evolution proceeded from simple molecular systems to complex living organisms. Several phenomena contribute to elucidate the material processes that have led to the emergence and transfer of symmetries. Their characteristics can be summarized: (1) symmetries are inherent to the structure of matter, since they already occur in the elementary particles, such as the neutrino; (2) simple atoms, such as oxygen and hydrogen produce a six-ray symmetry in water crystals a pattern from which these crystals cannot depart; (3) the mechanism of twinning, common in minerals, obliges several components to associate in a regular fashion guided by the properties of their atoms; (4) the symmetries of crystals are decided by the electronic properties of their constituent atoms. Since living organisms consist of the same atoms that are found in the minerals, it is not surprising that the symmetries of the minerals were transferred intact to the cell and organism levels; (5) another atomic property that has been preserved is periodicity. The existence of the Periodic Table of the elements shows how this phenomenon is so well established at the atomic level. This periodicity was also transferred to the living organism level. Both biological structures and functions display periodicity; (6) the recurrence of the same type of symmetry in minerals, plant organs and animal structures is an expression of the preservation of this periodicity; (7) another manifestation of the periodicity is found in the recurrence of the same symmetry in flowers of a large number of plant families which are not closely related in evolutionary terms; (8) the re-emergence of the same symmetry at different levels of organization is also elucidated by the fact that different atom combinations can display the same form and even the same function. This is what has been called molecular mimicry. Examples are the minerals with quite different chemical compositions which display the same symmetry and the proteins, that although they consist of different amino acid sequences, result in the same structural pattern and the same function. Due to the occurrence of molecular mimicry, in the cell's main macromolecules, an organism does not even need to have the same genes to exhibit a symmetry that appeared long ago in evolution; and (9) support for the concept that the biological periodicity is anchored on the chemical periodicity is found, among other features, on the fact that the six atoms that build the main macromolecules of the cell: the nucleic acids and proteins are all simple atoms that are located in a 'niche' on the right side of the Periodic Table of the chemical elements. The basis of biological symmetry and periodicity is now starting to be elucidated in atomic terms.

摘要

几何推导和数学公式表明,植物、动物和晶体的对称模式遵循相似的数学解决方案。这些变换对于揭示不同类型模式之间的关系具有重要价值。然而,它们既无法阐明导致自然界中对称性出现的物质过程,也无法解释随着进化从简单分子系统发展到复杂生物体,对称性是如何传递到更高层次的组织中的。有几种现象有助于阐明导致对称性出现和传递的物质过程。它们的特征可以总结如下:(1)对称性是物质结构所固有的,因为它们已经出现在基本粒子中,比如中微子;(2)简单原子,如氧和氢,在水晶中产生六射线对称——这是这些晶体无法偏离的一种模式;(3)孪晶机制在矿物中很常见,它使几个成分按照其原子特性的引导以规则的方式结合在一起;(4)晶体的对称性由其组成原子的电子特性决定。由于生物体由与矿物中相同的原子组成,所以矿物的对称性完整地传递到细胞和生物体层面也就不足为奇了;(5)另一个被保留下来的原子特性是周期性。元素周期表的存在表明了这种现象在原子层面是多么根深蒂固。这种周期性也传递到了生物体层面。生物结构和功能都表现出周期性;(6)矿物、植物器官和动物结构中相同类型对称性的重复出现,是这种周期性得以保留的一种体现;(7)周期性的另一种表现形式是,在大量进化上没有密切关系的植物科的花朵中,相同对称性的重复出现;(8)不同的原子组合可以呈现相同的形式甚至相同的功能,这一事实也解释了相同对称性在不同组织层次上的再次出现。这就是所谓的分子模拟。例子包括具有不同化学成分但呈现相同对称性的矿物,以及蛋白质,尽管它们由不同的氨基酸序列组成,但却产生相同的结构模式和相同的功能。由于分子模拟的存在,在细胞的主要大分子中,生物体甚至不需要拥有相同的基因就能展现出在进化中很早就出现的对称性;(9)对生物周期性基于化学周期性这一概念的支持,除了其他特征外,还体现在构建细胞主要大分子(核酸和蛋白质)的六个原子都是位于化学元素周期表右侧“特定位置”的简单原子这一事实上。生物对称性和周期性的基础现在正开始从原子层面得到阐明。

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