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细菌视紫红质中色氨酸-182和色氨酸-189的紫外共振拉曼光谱:关于色氨酸-182结构及其与视黄醛空间相互作用的新信息。

Ultraviolet resonance Raman spectra of Trp-182 and Trp-189 in bacteriorhodopsin: novel information on the structure of Trp-182 and its steric interaction with retinal.

作者信息

Hashimoto S, Obata K, Takeuchi H, Needleman R, Lanyi J K

机构信息

Pharmaceutical Institute, Tohoku University, Aobayama, Sendai 980-77, Japan.

出版信息

Biochemistry. 1997 Sep 30;36(39):11583-90. doi: 10.1021/bi971404f.

DOI:10.1021/bi971404f
PMID:9305948
Abstract

Ultraviolet (244 nm) resonance Raman spectra of Trp-182 and Trp-189 in bacteriorhodopsin were obtained by subtracting the spectrum of the mutants, Trp-182-->Phe or Trp-189-->Phe, from that of the wild-type. Analysis of the spectra shows that the chi2,1 torsion angle about the Cbeta-C3 bond is +/-93 degrees for Trp-182 and +/-100 degrees for Trp-189. Both Trp residues are moderately hydrogen bonded to proton acceptors at their indolyl nitrogens in hydrophobic environments. The environmental hydrophobicity is particularly strong for Trp-182, as judged from the splitting of the W7 Raman band to a triplet. The Raman information on the structure and environment of Trp-189 is consistent with the molecular model from electron diffraction [Grigorieff et al. (1996) J. Mol. Biol. 259, 393-421]. On the other hand, the chi2,1 angle and the hydrogen-bonding state of Trp-182 found here differ from those in the model structure. Revision of the model to correspond to the Raman findings would require a 60 degrees rotation of the Trp-182 indole ring about the Cbeta-C3 bond toward the chromophore retinal and the presence of a water molecule that is hydrogen bonded to the indolyl nitrogen. The triplet feature of the W7 band of Trp-182 is attributable to unusually strong steric repulsion between the indole ring and the 9- and 13-methyl groups of the retinal. Resonance Raman spectra in the visible suggest that this steric conflict destabilizes the 13-cis isomeric state of the retinal.

摘要

通过从野生型细菌视紫红质的光谱中减去突变体(色氨酸-182突变为苯丙氨酸或色氨酸-189突变为苯丙氨酸)的光谱,获得了色氨酸-182和色氨酸-189的紫外(244纳米)共振拉曼光谱。光谱分析表明,色氨酸-182围绕Cβ-C3键的χ2,1扭转角为±93度,色氨酸-189为±100度。在疏水环境中,两个色氨酸残基在其吲哚氮原子处均与质子受体适度氢键结合。从W7拉曼带分裂为三重态判断,色氨酸-182所处环境的疏水性特别强。关于色氨酸-189的结构和环境的拉曼信息与电子衍射得到的分子模型[格里戈里耶夫等人(1996年)《分子生物学杂志》259卷,393 - 421页]一致。另一方面,此处发现的色氨酸-182的χ2,1角和氢键状态与模型结构中的不同。要使模型与拉曼研究结果相符,需要色氨酸-182的吲哚环围绕Cβ-C3键朝着发色团视黄醛旋转60度,并存在一个与吲哚氮原子氢键结合的水分子。色氨酸-182的W7带的三重态特征归因于吲哚环与视黄醛的9-甲基和13-甲基之间异常强烈的空间排斥。可见光区域的共振拉曼光谱表明,这种空间冲突使视黄醛的13-顺式异构体状态不稳定。

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