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多囊肾病1基因重复部分的突变检测

Mutation detection in the repeated part of the PKD1 gene.

作者信息

Roelfsema J H, Spruit L, Saris J J, Chang P, Pirson Y, van Ommen G J, Peters D J, Breuning M H

机构信息

Department of Human Genetics, Sylvius Laboratory, Leiden University, Leiden, The Netherlands.

出版信息

Am J Hum Genet. 1997 Nov;61(5):1044-52. doi: 10.1086/301600.

DOI:10.1086/301600
PMID:9345095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1716049/
Abstract

The principle cause of one of the most prevalent genetic disorders, autosomal dominant polycystic kidney disease, involves mutations in the PKD1 gene. However, since its identification in 1994, only 27 mutations have been published. Detection of mutations has been complicated because the greater part of the gene lies within a genomic region that is reiterated several times at another locus on chromosome 16. Amplification of DNA fragments in the repeated part of the PKD1 gene will lead to coamplification of highly homologous fragments derived from this other locus. These additional fragments severely hamper point-mutation detection. None of the point mutations published to date are located in the repeated part of the PKD1 gene. However, we have reduced the problems posed by the strong homology, by using the protein-truncation test, and we have identified eight novel mutations, seven of which are located in the repeated part of the PKD1 gene.

摘要

最常见的遗传性疾病之一——常染色体显性多囊肾病的主要病因涉及PKD1基因突变。然而,自1994年该基因被识别以来,仅有27种突变被公布。由于该基因的大部分位于基因组区域内,而此区域在16号染色体的另一位点上重复出现了数次,因此突变检测变得复杂。PKD1基因重复部分的DNA片段扩增会导致来自其他位点的高度同源片段共同扩增。这些额外的片段严重妨碍了点突变检测。迄今公布的点突变均不在PKD1基因的重复部分。不过,我们通过使用蛋白质截短试验减少了强同源性带来的问题,并且识别出了8种新突变,其中7种位于PKD1基因的重复部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/d3a744c95ae1/ajhg00011-0062-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/ea9c3c2349a8/ajhg00011-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/4ae6fefb6f65/ajhg00011-0062-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/d3a744c95ae1/ajhg00011-0062-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/ea9c3c2349a8/ajhg00011-0061-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/4ae6fefb6f65/ajhg00011-0062-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1aa3/1716049/d3a744c95ae1/ajhg00011-0062-b.jpg

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1
Mutation detection in the repeated part of the PKD1 gene.多囊肾病1基因重复部分的突变检测
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2
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Am J Hum Genet. 1997 Jun;60(6):1399-410. doi: 10.1086/515467.
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Amplification of a 13.5-kb region of the PKD1 gene containing the 2.5-kb polypyrimidine tract in intron 21 facilitates mutation detection in this gene.对包含第21内含子中2.5 kb多嘧啶序列的PKD1基因13.5 kb区域进行扩增,有助于该基因中突变的检测。
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BMC Med Genet. 2004 Feb 3;5:2. doi: 10.1186/1471-2350-5-2.

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本文引用的文献

1
Bilateral polycystic disease of the kidneys; a follow-up of two hundred and eighty-four patients and their families.双侧多囊肾病:对284例患者及其家族的随访
Acta Med Scand Suppl. 1957;328:1-255.
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Identification of mutations in the duplicated region of the polycystic kidney disease 1 gene (PKD1) by a novel approach.采用一种新方法鉴定多囊肾病1基因(PKD1)重复区域中的突变。
Am J Hum Genet. 1997 Jun;60(6):1399-410. doi: 10.1086/515467.
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Detection of translation terminating mutations in the PKD1 gene.多囊肾病1基因(PKD1基因)中翻译终止突变的检测
高分辨率熔解曲线分析作为常染色体显性多囊肾病(ADPKD)的一种筛查方法
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Polycystin-1 but not polycystin-2 deficiency causes upregulation of the mTOR pathway and can be synergistically targeted with rapamycin and metformin.多囊蛋白-1而非多囊蛋白-2的缺乏会导致mTOR信号通路上调,并且可以与雷帕霉素和二甲双胍协同作用进行靶向治疗。
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Mutation analysis of the entire PKD1 gene: genetic and diagnostic implications.整个多囊肾病1基因(PKD1)的突变分析:遗传学及诊断意义
Am J Hum Genet. 2001 Jan;68(1):46-63. doi: 10.1086/316939. Epub 2000 Dec 12.
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Mutation detection of PKD1 identifies a novel mutation common to three families with aneurysms and/or very-early-onset disease.多囊肾病1基因(PKD1)的突变检测发现了一种新的突变,该突变在三个患有动脉瘤和/或极早发疾病的家族中常见。
Am J Hum Genet. 1999 Dec;65(6):1561-71. doi: 10.1086/302657.
7
Identification of mutations in the repeated part of the autosomal dominant polycystic kidney disease type 1 gene, PKD1, by long-range PCR.通过长程聚合酶链反应鉴定1型常染色体显性多囊肾病基因PKD1重复部分的突变。
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Autosomal dominant polycystic kidney disease (ADPKD) in an Italian family carrying a novel nonsense mutation and two missense changes in exons 44 and 45 of the PKD1 Gene.一个意大利家族中的常染色体显性多囊肾病(ADPKD),该家族携带PKD1基因第44和45外显子的一个新的无义突变和两个错义改变。
Am J Med Genet. 1996 Oct 16;65(2):155-9. doi: 10.1002/(SICI)1096-8628(19961016)65:2<155::AID-AJMG15>3.0.CO;2-P.
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A stable, nonsense mutation associated with a case of infantile onset polycystic kidney disease 1 (PKD1).一种与1型婴儿型多囊肾病(PKD1)病例相关的稳定无义突变。
Hum Mol Genet. 1996 Apr;5(4):539-42. doi: 10.1093/hmg/5.4.539.
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Detection of a novel nonsense mutation and an intragenic polymorphism in the PKD1 gene of a Cypriot family with autosomal dominant polycystic kidney disease.在一个患有常染色体显性多囊肾病的塞浦路斯家族中检测到PKD1基因的一种新型无义突变和一个基因内多态性。
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The long walk toward the PKD1 gene. The European PKD1 Consortium.迈向PKD1基因的漫长征程。欧洲PKD1研究联盟。
Adv Nephrol Necker Hosp. 1996;25:131-45.
9
The sea urchin sperm receptor for egg jelly is a modular protein with extensive homology to the human polycystic kidney disease protein, PKD1.海胆卵胶膜的精子受体是一种模块化蛋白质,与人类多囊肾病蛋白PKD1具有广泛的同源性。
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PKD2, a gene for polycystic kidney disease that encodes an integral membrane protein.PKD2,一种编码整合膜蛋白的多囊肾病基因。
Science. 1996 May 31;272(5266):1339-42. doi: 10.1126/science.272.5266.1339.