Fefeu S, Bouaziz S, Huet J C, Pernollet J C, Guittet E
Laboratoire de RMN, ICSN-CNRS, Gif-sur-Yvette, France.
Protein Sci. 1997 Nov;6(11):2279-84. doi: 10.1002/pro.5560061101.
Cryptogein belongs to a new family of 10-kDa proteins called elicitins. Elicitins are necrotic and signaling proteins secreted by Phytophthora spp. responsible for the incompatible reaction and systemic hypersensitive-like necroses of diverse plant species leading to resistance against fungal or bacterial plant pathogens. The solution structure of beta cryptogein from Phytophthora cryptogea fungus was determined by using multidimensional heteronuclear nuclear magnetic resonance spectroscopy. A set of 18 structures was calculated using 1360 NOE-derived distance restraints and 40 dihedral angle restraints obtained from 3JHNH alpha couplings. The RMS deviation from the mean structure is 0.87 +/- 0.14 A for backbone atoms and 1.34 +/- 0.14 A for all the non-hydrogen atoms of residues 2 to 98. The structure of beta cryptogein reveals a novel protein fold, with five helices and a double-stranded beta-sheet facing an omega-loop. One edge of the beta-sheet and the adjacent face of the omega-loop form a hydrophobic cavity. This cavity made of highly conserved residues represents a plausible binding site. Residue 13, which has been identified from directed mutagenesis and natural sequence comparison studies as a key amino acid involved in the differential control of necrosis, is surface exposed and could contribute to the binding to a ligand or a receptor. The solution structure is close to the X-ray structure, with slight differences lightly due to the crystal packing.
隐地蛋白属于一类名为激发子的10 kDa蛋白质新家族。激发子是由疫霉属分泌的坏死和信号蛋白,负责多种植物物种的不相容反应和系统性过敏样坏死,从而导致对真菌或细菌植物病原体产生抗性。利用多维异核核磁共振光谱法测定了来自寄生疫霉真菌的β-隐地蛋白的溶液结构。使用从1360个源自核Overhauser效应(NOE)的距离限制和从3JHNHα耦合获得的40个二面角限制计算出一组18个结构。对于残基2至98的主链原子,与平均结构的均方根偏差为0.87±0.14 Å,对于所有非氢原子为1.34±0.14 Å。β-隐地蛋白的结构揭示了一种新颖的蛋白质折叠,有五个螺旋和一个面向ω-环的双链β-折叠。β-折叠的一条边缘和ω-环的相邻面形成一个疏水腔。这个由高度保守残基构成的腔代表一个可能的结合位点。残基13已从定向诱变和自然序列比较研究中鉴定为参与坏死差异控制的关键氨基酸,它暴露于表面,可能有助于与配体或受体结合。溶液结构与X射线结构接近,由于晶体堆积略有差异。