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单链偏好性核糖核酸酶通过破坏双链RNA的二级结构来降解它。

Single-strand-preferring RNases degrade double-stranded RNAs by destabilizing its secondary structure.

作者信息

Yakovlev G, Moiseyev G P, Sorrentino S, De Prisco R, Libonati M

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.

出版信息

J Biomol Struct Dyn. 1997 Oct;15(2):243-50. doi: 10.1080/07391102.1997.10508189.

DOI:10.1080/07391102.1997.10508189
PMID:9399152
Abstract

To establish the mechanism of dsRNA degradation by mammalian single-stranded-preferring ribonucleases, and, in particular, the influence of their positively charged non-catalytic amino acid residues, we have studied the kinetic parameters of the depolimerization of single- and double-stranded polyribonucleotides such as poly(U), poly(U).poly(A), poly(C) and poly(C).poly(I) by the action of human seminal RNase, bovine seminal RNase and ox pancreas RNase A. While the activities of these RNases on poly(I).poly(C) were definitely lower than those on poly(C), the activities of human seminal and bovine seminal RNases on poly(U).poly(A) and poly(U) were of the same order of magnitude under physiological salt conditions. The ratio of the RNase A degrading activities towards poly(U) and poly(U).poly(A) at I = 0.16 M is ten times higher than the corresponding ratios determined with bovine seminal and human seminal ribonucleases. The high activities of these two RNases towards poly(U).poly(A) are discussed on the basis of their efficient estabilishing action on this double-helical nucleic acid due to their high affinity for poly(A). The destabilizing action of human seminal RNase and bovine seminal RNase on the poly (U).poly(A) duplex is higher than that measurable with bovine RNase A because of the higher number of positive charges present on those enzyme molecules. This may therefore explain why human seminal and bovine seminal ribonucleases are more efficient than RNase A in the depolymerization of poly(U).poly(A) at physiological ionic strength.

摘要

为了确定哺乳动物单链偏好性核糖核酸酶降解双链RNA的机制,尤其是其带正电荷的非催化氨基酸残基的影响,我们研究了人精浆核糖核酸酶、牛精浆核糖核酸酶和牛胰核糖核酸酶A作用下单链和双链多聚核糖核苷酸(如聚尿苷酸、聚尿苷酸·聚腺苷酸、聚胞苷酸和聚胞苷酸·聚肌苷酸)解聚的动力学参数。虽然这些核糖核酸酶对聚肌苷酸·聚胞苷酸的活性明显低于对聚胞苷酸的活性,但在生理盐条件下,人精浆核糖核酸酶和牛精浆核糖核酸酶对聚尿苷酸·聚腺苷酸和聚尿苷酸的活性处于同一数量级。在离子强度I = 时,核糖核酸酶A对聚尿苷酸和聚尿苷酸·聚腺苷酸的降解活性之比比用牛精浆核糖核酸酶和人精浆核糖核酸酶测定的相应比值高10倍。基于这两种核糖核酸酶对聚腺苷酸的高亲和力,对聚尿苷酸·聚腺苷酸这种双螺旋核酸具有高效的稳定作用,讨论了它们对聚尿苷酸·聚腺苷酸的高活性。由于这些酶分子上存在更多的正电荷,人精浆核糖核酸酶和牛精浆核糖核酸酶对聚尿苷酸·聚腺苷酸双链的去稳定作用高于用牛核糖核酸酶A可测量的作用。因此,这可能解释了为什么在生理离子强度下,人精浆核糖核酸酶和牛精浆核糖核酸酶在聚尿苷酸·聚腺苷酸解聚方面比核糖核酸酶A更有效。

相似文献

1
Single-strand-preferring RNases degrade double-stranded RNAs by destabilizing its secondary structure.单链偏好性核糖核酸酶通过破坏双链RNA的二级结构来降解它。
J Biomol Struct Dyn. 1997 Oct;15(2):243-50. doi: 10.1080/07391102.1997.10508189.
2
Double-stranded RNA: the variables controlling its degradation by RNases.双链RNA:控制其被核糖核酸酶降解的变量。
Nucleic Acids Symp Ser. 1995(33):106-8.
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Degradation of double-stranded RNA by human pancreatic ribonuclease: crucial role of noncatalytic basic amino acid residues.人胰腺核糖核酸酶对双链RNA的降解作用:非催化性碱性氨基酸残基的关键作用
Biochemistry. 2003 Sep 2;42(34):10182-90. doi: 10.1021/bi030040q.
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Human pancreatic-type and nonpancreatic-type ribonucleases: a direct side-by-side comparison of their catalytic properties.人胰腺型和非胰腺型核糖核酸酶:它们催化特性的直接并行比较。
Arch Biochem Biophys. 1994 Aug 1;312(2):340-8. doi: 10.1006/abbi.1994.1318.
5
Revisiting the action of bovine ribonuclease A and pancreatic-type ribonucleases on double-stranded RNA.重新审视牛核糖核酸酶A和胰腺型核糖核酸酶对双链RNA的作用。
Mol Cell Biochem. 1992 Nov 18;117(2):139-51. doi: 10.1007/BF00230753.
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The activity on double-stranded RNA of aggregates of ribonuclease A higher than dimers increases as a function of the size of the aggregates.核糖核酸酶A聚集体(高于二聚体)对双链RNA的活性随聚集体大小而增加。
Biochem J. 1996 Aug 15;318 ( Pt 1)(Pt 1):287-90. doi: 10.1042/bj3180287.
7
Origin of the catalytic activity of bovine seminal ribonuclease against double-stranded RNA.牛精核糖核酸酶对双链RNA催化活性的起源
Biochemistry. 1998 Mar 24;37(12):4023-33. doi: 10.1021/bi9722047.
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Ionic control of enzymic degradation of double-stranded RNA.双链RNA酶促降解的离子调控
Biochim Biophys Acta. 1980 Aug 26;609(1):40-52. doi: 10.1016/0005-2787(80)90199-9.
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Purification from normal human plasma and biochemical characterization of a ribonuclease specific for poly(C) and poly(U).从正常人血浆中纯化及对聚(C)和聚(U)具有特异性的核糖核酸酶的生化特性分析
Arch Biochem Biophys. 2003 May 1;413(1):83-90. doi: 10.1016/s0003-9861(03)00082-1.
10
Human seminal ribonuclease. A tool to check the role of basic charges and glycosylation of a ribonuclease in the action of the enzyme on double-stranded RNA.人精浆核糖核酸酶。一种用于检验核糖核酸酶的碱性电荷和糖基化在该酶对双链RNA作用中的作用的工具。
Biochim Biophys Acta. 1985 Feb 4;827(2):135-9. doi: 10.1016/0167-4838(85)90081-0.

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The first crystal structure of human RNase 6 reveals a novel substrate-binding and cleavage site arrangement.人核糖核酸酶6的首个晶体结构揭示了一种新型的底物结合和切割位点排列方式。
Biochem J. 2016 Jun 1;473(11):1523-36. doi: 10.1042/BCJ20160245. Epub 2016 Mar 24.
2
Oligomerization of bovine ribonuclease A: structural and functional features of its multimers.牛核糖核酸酶A的寡聚化:其多聚体的结构和功能特征
Biochem J. 2004 Jun 1;380(Pt 2):311-27. doi: 10.1042/BJ20031922.
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Functional topography of nascent RNA in elongation intermediates of RNA polymerase.
RNA聚合酶延伸中间体中新生RNA的功能拓扑结构。
Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14699-704. doi: 10.1073/pnas.95.25.14699.