Suppr超能文献

在生物过程中将自由能转化为功。

Channelling free energy into work in biological processes.

作者信息

Krupka R M

机构信息

Agriculture Canada, London, Ontario, Canada.

出版信息

Exp Physiol. 1998 Mar;83(2):243-51. doi: 10.1113/expphysiol.1998.sp004109.

Abstract

The process by which free energy from ATP or an ion gradient is coupled to work--either osmotic work, by a membrane pump, or mechanical work, by a molecular motor--as well as the development of force by a molecular motor, can be explained by mechanisms dependent on substrate binding energy. Coupling involves a reaction sequence that combines the driving and driven reactions and that is controlled at switch points where the mobility of the coupling protein and its specificity in binding and catalysis can be abruptly altered; the altered state is an intermediate (or transition state) in the coupled reaction, the unaltered state an intermediate in the uncoupled reaction (slippage). The balance between these states, which is determined by the increase in substrate binding energy in the transformation, decides the relative importance of the coupled and uncoupled paths. On this basis a general expression for switching may be derived: the tightness of coupling is limited by a ratio of substrate dissociation constants before and after a controlling change in state: Rate(coupled)/Rate(uncoupled) < or = Kinitial state/Kfinal state. When binding energy is used in this way to distort the conformation of a protein, mechanical work is done; the work is internal but becomes external if the protein is connected to an external load. External work, force F multiplied by distance d, is then limited by a ratio of substrate dissociation constants before and after the conformational change: W = Fd < RT In(Kinitial state/Kfinal state). The ratios of dissociation constants, estimated from published values of the force exerted by molecular motors, are > 1 x 10(4) for myosin and > 2 x 10(4) for kinesin. From the tightness of coupling of the anion exchange carrier of red cells the ratio of constants for coupling is > or = 4 x 10(4). These increments can be accounted for by conversion of a surface complex to an enclosed complex, as in chelate formation. The work done by an ATP-driven motor is limited by the free energy of ATP hydrolysis, but the force developed is independent of the ATP reaction, and comes from binding energy with either the driving or driven substrate.

摘要

ATP或离子梯度中的自由能与功(通过膜泵进行的渗透功或通过分子马达进行的机械功)相偶联的过程,以及分子马达产生力的过程,可以用依赖于底物结合能的机制来解释。偶联涉及一个反应序列,该序列将驱动反应和被驱动反应结合起来,并在开关点受到控制,在这些开关点,偶联蛋白的迁移率及其结合和催化特异性会突然改变;改变后的状态是偶联反应中的一个中间体(或过渡态),未改变的状态是未偶联反应(滑动)中的一个中间体。这些状态之间的平衡由转化过程中底物结合能的增加决定,它决定了偶联路径和未偶联路径的相对重要性。在此基础上,可以推导出一个关于转换的通用表达式:偶联的紧密程度受到状态控制变化前后底物解离常数之比的限制:速率(偶联)/速率(未偶联)≤初始状态的K值/最终状态的K值。当以这种方式利用结合能使蛋白质构象发生扭曲时,就完成了机械功;该功是内部的,但如果蛋白质与外部负载相连,它就会变成外部功。外部功,即力F乘以距离d,然后受到构象变化前后底物解离常数之比的限制:W = Fd ≤ RT ln(初始状态的K值/最终状态的K值)。根据已发表的分子马达施加力的值估算出的解离常数之比,肌球蛋白大于1×10⁴,驱动蛋白大于2×10⁴。从红细胞阴离子交换载体的偶联紧密程度来看,偶联常数之比≥4×10⁴。这些增加可以通过表面复合物转化为封闭复合物来解释,就像螯合物形成那样。ATP驱动的马达所做的功受到ATP水解自由能的限制,但产生的力与ATP反应无关,而是来自与驱动底物或被驱动底物的结合能。

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